Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_H24
(495 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20967|ODO1_YEAST 2-oxoglutarate dehydrogenase E1 compon... 40 0.002
sp|Q60597|ODO1_MOUSE 2-oxoglutarate dehydrogenase E1 compon... 37 0.025
sp|Q5RCB8|ODO1_PONPY 2-oxoglutarate dehydrogenase E1 compon... 36 0.043
sp|Q60HE2|ODO1_MACFA 2-oxoglutarate dehydrogenase E1 compon... 36 0.043
sp|Q02218|ODO1_HUMAN 2-oxoglutarate dehydrogenase E1 compon... 36 0.043
sp|P09961|AMY1_DICTH Alpha-amylase 1 (1,4-alpha-D-glucan gl... 32 0.63
sp|Q89AJ7|ODO1_BUCBP Oxoglutarate dehydrogenase 30 2.4
sp|Q8R5C8|ZMY11_MOUSE Zinc finger MYND domain containing pr... 28 9.0
>sp|P20967|ODO1_YEAST 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor
(Alpha-ketoglutarate dehydrogenase)
Length = 1014
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 101 EPRVNNLIKVKLPNHRKPKISYVGRSPSAAAAAGNKFIHLMEISQFMR 244
EPR++ +K + ++ K+ Y GR+PS A AAG+K +HL E F++
Sbjct: 962 EPRLHTTLK-ETDKYKDFKVRYCGRNPSGAVAAGSKSLHLAEEDAFLK 1008
>sp|Q60597|ODO1_MOUSE 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor
(Alpha-ketoglutarate dehydrogenase)
Length = 1019
Score = 37.0 bits (84), Expect = 0.025
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +2
Query: 98 VEPRVNNLIKVKLPNHRKPKISYVGRSPSAAAAAGNKFIHLMEISQFMRQAISTRA 265
V+PR+ I R + Y GR P+AA A GNK HL E+ +F+ A A
Sbjct: 965 VKPRLRTTID------RAKPVWYAGRDPAAAPATGNKKTHLTELQRFLDTAFDLDA 1014
Score = 35.4 bits (80), Expect = 0.074
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 3 YDLLFEELTKFSEAGVQWVQEEHKNMG 83
+DLL +E K+ A + W QEEHKN G
Sbjct: 934 FDLLLKEAQKYPNAELAWCQEEHKNQG 960
>sp|Q5RCB8|ODO1_PONPY 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor
(Alpha-ketoglutarate dehydrogenase)
Length = 1023
Score = 36.2 bits (82), Expect = 0.043
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 3 YDLLFEELTKFSEAGVQWVQEEHKNMG 83
+DLL +E+ K+ A + W QEEHKN G
Sbjct: 938 FDLLLKEVQKYPSAELAWCQEEHKNQG 964
Score = 34.7 bits (78), Expect = 0.13
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 98 VEPRVNNLIKVKLPNHRKPKISYVGRSPSAAAAAGNKFIHLMEISQFMRQA 250
V+PR+ I R + Y GR P+AA A GNK HL E+ + + A
Sbjct: 969 VKPRLRTTIS------RAKPVWYAGRDPAAAPATGNKKTHLTELQRLLDTA 1013
>sp|Q60HE2|ODO1_MACFA 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor
(Alpha-ketoglutarate dehydrogenase)
Length = 1023
Score = 36.2 bits (82), Expect = 0.043
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 3 YDLLFEELTKFSEAGVQWVQEEHKNMG 83
+DLL +E+ K+ A + W QEEHKN G
Sbjct: 938 FDLLLKEVQKYPNAELAWCQEEHKNQG 964
Score = 34.7 bits (78), Expect = 0.13
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 98 VEPRVNNLIKVKLPNHRKPKISYVGRSPSAAAAAGNKFIHLMEISQFMRQA 250
V+PR+ I R + Y GR P+AA A GNK HL E+ + + A
Sbjct: 969 VKPRLRTTIS------RAKPVWYAGRDPAAAPATGNKKTHLTELQRLLDTA 1013
>sp|Q02218|ODO1_HUMAN 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor
(Alpha-ketoglutarate dehydrogenase)
Length = 1002
Score = 36.2 bits (82), Expect = 0.043
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 3 YDLLFEELTKFSEAGVQWVQEEHKNMG 83
+DLL +E+ K+ A + W QEEHKN G
Sbjct: 938 FDLLLKEVQKYPNAELAWCQEEHKNQG 964
Score = 29.6 bits (65), Expect = 4.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 98 VEPRVNNLIKVKLPNHRKPKISYVGRSPSAAAAAGNKFIH 217
V+PR+ I R + Y GR+P+AA A GNK H
Sbjct: 969 VKPRLRTTIS------RAKPVWYAGRNPAAAPATGNKKTH 1002
>sp|P09961|AMY1_DICTH Alpha-amylase 1 (1,4-alpha-D-glucan glucanohydrolase)
Length = 686
Score = 32.3 bits (72), Expect = 0.63
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = -1
Query: 453 IYWPNQNRNVY*LIISAQNYMENSRPEIEAHVYFKFNCHRKGETLHASY*YRVYL 289
+Y P+ +Y +I A+NY+ENS EI ++ F F+C E + S + +YL
Sbjct: 373 LYLPHLRTAIYEHLIKAENYLENS--EIRFNI-FDFDCDGNDEIIVESPFFNLYL 424
>sp|Q89AJ7|ODO1_BUCBP Oxoglutarate dehydrogenase
Length = 916
Score = 30.4 bits (67), Expect = 2.4
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 122 IKVKLPNHRKPKISYVGRSPSAAAAAGNKFIHLMEISQFMRQAIS 256
+K LP H K ++YVGRS SA+ A G IH + + + A++
Sbjct: 871 LKKLLPKHSK--LNYVGRSSSASPATGYMKIHKEQQKKIIYDALN 913
>sp|Q8R5C8|ZMY11_MOUSE Zinc finger MYND domain containing protein 11
Length = 562
Score = 28.5 bits (62), Expect = 9.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 375 EIEAHVYFKFNCHRKGETLHASY*YRVY 292
E E H ++ F CH GE L +RVY
Sbjct: 55 ETETHDWYCFECHLPGEVLICDLCFRVY 82
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,542,084
Number of Sequences: 369166
Number of extensions: 996204
Number of successful extensions: 1969
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1969
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)