Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_H19
(387 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90828|DYJ1_CHICK Dynein light intermediate chain 1, cyt... 39 0.003
sp|Q5RE09|DYJ2_PONPY Dynein light intermediate chain 2, cyt... 38 0.006
sp|Q4R5P6|DYJ2_MACFA Dynein light intermediate chain 2, cyt... 38 0.006
sp|O43237|DYJ2_HUMAN Dynein light intermediate chain 2, cyt... 38 0.006
sp|Q8R1Q8|DYJ1_MOUSE Dynein light intermediate chain 1, cyt... 37 0.011
sp|Q9Y6G9|DYJ1_HUMAN Dynein light intermediate chain 1, cyt... 37 0.011
sp|Q9QXU8|DYJ1_RAT Dynein light intermediate chain 1, cytos... 37 0.011
sp|Q6PDL0|DYJ2_MOUSE Dynein light intermediate chain 2, cyt... 36 0.031
sp|Q62698|DYJ2_RAT Dynein light intermediate chain 2, cytos... 36 0.031
sp|Q92560|BAP1_HUMAN Ubiquitin carboxyl-terminal hydrolase ... 30 2.2
>sp|Q90828|DYJ1_CHICK Dynein light intermediate chain 1, cytosolic (Dynein light chain A)
(DLC-A) (LIC57/59)
Length = 515
Score = 39.3 bits (90), Expect = 0.003
Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 76 ANSAGEGVLANFFNSLL-KKPNSPANPGNLNAS 171
A + EGVLANFFNSLL KK SP PG + S
Sbjct: 426 AGATSEGVLANFFNSLLSKKTGSPGGPGGVGGS 458
>sp|Q5RE09|DYJ2_PONPY Dynein light intermediate chain 2, cytosolic
Length = 492
Score = 38.1 bits (87), Expect = 0.006
Identities = 19/27 (70%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Frame = +1
Query: 79 NSAGEGVLANFFNSLL-KKPNSPANPG 156
N+A EGVLA+FFNSLL KK SP +PG
Sbjct: 422 NAASEGVLASFFNSLLSKKTGSPGSPG 448
>sp|Q4R5P6|DYJ2_MACFA Dynein light intermediate chain 2, cytosolic
Length = 492
Score = 38.1 bits (87), Expect = 0.006
Identities = 19/27 (70%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Frame = +1
Query: 79 NSAGEGVLANFFNSLL-KKPNSPANPG 156
N+A EGVLA+FFNSLL KK SP +PG
Sbjct: 422 NAASEGVLASFFNSLLSKKTGSPGSPG 448
>sp|O43237|DYJ2_HUMAN Dynein light intermediate chain 2, cytosolic (LIC53/55) (LIC-2)
Length = 492
Score = 38.1 bits (87), Expect = 0.006
Identities = 19/27 (70%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Frame = +1
Query: 79 NSAGEGVLANFFNSLL-KKPNSPANPG 156
N+A EGVLA+FFNSLL KK SP +PG
Sbjct: 422 NAASEGVLASFFNSLLSKKTGSPGSPG 448
>sp|Q8R1Q8|DYJ1_MOUSE Dynein light intermediate chain 1, cytosolic (Dynein light chain A)
(DLC-A)
Length = 523
Score = 37.4 bits (85), Expect = 0.011
Identities = 19/28 (67%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 76 ANSAGEGVLANFFNSLL-KKPNSPANPG 156
A + EGVLANFFNSLL KK SP PG
Sbjct: 436 AGATSEGVLANFFNSLLSKKTGSPGGPG 463
>sp|Q9Y6G9|DYJ1_HUMAN Dynein light intermediate chain 1, cytosolic (Dynein light chain A)
(DLC-A)
Length = 523
Score = 37.4 bits (85), Expect = 0.011
Identities = 19/28 (67%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 76 ANSAGEGVLANFFNSLL-KKPNSPANPG 156
A + EGVLANFFNSLL KK SP PG
Sbjct: 436 AGATSEGVLANFFNSLLSKKTGSPGGPG 463
>sp|Q9QXU8|DYJ1_RAT Dynein light intermediate chain 1, cytosolic (Dynein light chain A)
(DLC-A)
Length = 523
Score = 37.4 bits (85), Expect = 0.011
Identities = 19/28 (67%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 76 ANSAGEGVLANFFNSLL-KKPNSPANPG 156
A + EGVLANFFNSLL KK SP PG
Sbjct: 436 AGATSEGVLANFFNSLLSKKTGSPGGPG 463
>sp|Q6PDL0|DYJ2_MOUSE Dynein light intermediate chain 2, cytosolic
Length = 492
Score = 35.8 bits (81), Expect = 0.031
Identities = 18/26 (69%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +1
Query: 79 NSAGEGVLANFFNSLL-KKPNSPANP 153
N+A EGVLA+FFNSLL KK SP +P
Sbjct: 422 NAASEGVLASFFNSLLSKKTGSPGSP 447
>sp|Q62698|DYJ2_RAT Dynein light intermediate chain 2, cytosolic (LIC53/55) (LIC-2)
Length = 497
Score = 35.8 bits (81), Expect = 0.031
Identities = 18/26 (69%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +1
Query: 79 NSAGEGVLANFFNSLL-KKPNSPANP 153
N+A EGVLA+FFNSLL KK SP +P
Sbjct: 408 NAASEGVLASFFNSLLSKKTGSPGSP 433
>sp|Q92560|BAP1_HUMAN Ubiquitin carboxyl-terminal hydrolase BAP1 (BRCA1-associated
protein 1) (Cerebral protein 6)
Length = 729
Score = 29.6 bits (65), Expect = 2.2
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 7 KSHSTAAGQLTALKTKNYPTASPANSAGEGV--LANFFNSLLKKPNSPANPGNLNASMSA 180
K+ S A A+ T + P+ +P+N + + + + FNS L+ P ANP ++ +++
Sbjct: 466 KTSSGAGSPAVAVPTHSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTS 525
Query: 181 TVT 189
++
Sbjct: 526 HIS 528
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,303,448
Number of Sequences: 369166
Number of extensions: 620492
Number of successful extensions: 1953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1952
length of database: 68,354,980
effective HSP length: 95
effective length of database: 50,805,155
effective search space used: 1676570115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)