Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_H14
(684 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91924|ARF_DUGJA ADP-ribosylation factor 278 1e-74
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 >gi|51316981... 257 2e-68
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 257 2e-68
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regener... 256 4e-68
sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1) >gi|... 254 2e-67
sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1 253 3e-67
sp|P84082|ARF2_RAT ADP-ribosylation factor 2 >gi|51316991|s... 252 6e-67
sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 252 7e-67
sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 251 1e-66
sp|P34728|ARF_CRYNE ADP-ribosylation factor 251 2e-66
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 278 bits (710), Expect = 1e-74
Identities = 138/138 (100%), Positives = 138/138 (100%)
Frame = +2
Query: 44 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 223
MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 224 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 403
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 120
Query: 404 LLVFANKQDLPNAMNPAE 457
LLVFANKQDLPNAMNPAE
Sbjct: 121 LLVFANKQDLPNAMNPAE 138
Score = 99.8 bits (247), Expect = 6e-21
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +3
Query: 450 PQRITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK 593
P ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK
Sbjct: 136 PAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK 183
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
sp|P84079|ARF1_RAT ADP-ribosylation factor 1
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
Length = 181
Score = 257 bits (657), Expect = 2e-68
Identities = 129/138 (93%), Positives = 131/138 (94%)
Frame = +2
Query: 44 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 223
MGN+ +L LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 224 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 403
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 404 LLVFANKQDLPNAMNPAE 457
LLVFANKQDLPNAMN AE
Sbjct: 121 LLVFANKQDLPNAMNAAE 138
Score = 82.0 bits (201), Expect = 1e-15
Identities = 36/42 (85%), Positives = 40/42 (95%)
Frame = +3
Query: 459 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 584
ITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 139 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
Length = 181
Score = 257 bits (657), Expect = 2e-68
Identities = 129/138 (93%), Positives = 131/138 (94%)
Frame = +2
Query: 44 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 223
MGN+ +L LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 224 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 403
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 404 LLVFANKQDLPNAMNPAE 457
LLVFANKQDLPNAMN AE
Sbjct: 121 LLVFANKQDLPNAMNAAE 138
Score = 82.0 bits (201), Expect = 1e-15
Identities = 36/42 (85%), Positives = 40/42 (95%)
Frame = +3
Query: 459 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 584
ITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 139 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
LRRG202)
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
Length = 181
Score = 256 bits (654), Expect = 4e-68
Identities = 129/138 (93%), Positives = 131/138 (94%)
Frame = +2
Query: 44 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 223
MGN+ +LL L GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 224 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 403
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 404 LLVFANKQDLPNAMNPAE 457
LLVFANKQDLPNAMN AE
Sbjct: 121 LLVFANKQDLPNAMNAAE 138
Score = 82.4 bits (202), Expect = 1e-15
Identities = 36/42 (85%), Positives = 40/42 (95%)
Frame = +3
Query: 459 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 584
ITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWL+ LKN+
Sbjct: 139 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1)
sp|P61209|ARF1_DROME ADP-ribosylation factor 1
Length = 182
Score = 254 bits (648), Expect = 2e-67
Identities = 126/138 (91%), Positives = 130/138 (94%)
Frame = +2
Query: 44 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 223
MGN+ +L LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 224 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 403
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ EAREELMRML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAV 120
Query: 404 LLVFANKQDLPNAMNPAE 457
LL+FANKQDLPNAMN AE
Sbjct: 121 LLIFANKQDLPNAMNAAE 138
Score = 85.5 bits (210), Expect = 1e-16
Identities = 38/44 (86%), Positives = 41/44 (93%)
Frame = +3
Query: 459 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSK 590
ITDKLGLHSLRNR+WYIQATCATSGDGLYEGLDWLS LKN ++
Sbjct: 139 ITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNANR 182
>sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1
Length = 197
Score = 253 bits (647), Expect = 3e-67
Identities = 127/138 (92%), Positives = 130/138 (94%)
Frame = +2
Query: 44 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 223
MG ++ L RLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 224 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 403
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVNEAREELMRML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAV 120
Query: 404 LLVFANKQDLPNAMNPAE 457
LLVFANKQDLPNAMN AE
Sbjct: 121 LLVFANKQDLPNAMNAAE 138
Score = 77.8 bits (190), Expect = 2e-14
Identities = 34/47 (72%), Positives = 39/47 (82%)
Frame = +3
Query: 459 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK*N 599
ITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS ++N+ N
Sbjct: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQKANCN 185
>sp|P84082|ARF2_RAT ADP-ribosylation factor 2
sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2
sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2
Length = 181
Score = 252 bits (644), Expect = 6e-67
Identities = 127/138 (92%), Positives = 128/138 (92%)
Frame = +2
Query: 44 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 223
MGN+ L LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 224 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 403
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL RML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 404 LLVFANKQDLPNAMNPAE 457
LLVF NKQDLPNAMN AE
Sbjct: 121 LLVFVNKQDLPNAMNAAE 138
Score = 82.8 bits (203), Expect = 8e-16
Identities = 37/42 (88%), Positives = 39/42 (92%)
Frame = +3
Query: 459 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 584
ITDKLGLHSLR R+WYIQATCATSGDGLYEGLDWLS LKN+
Sbjct: 139 ITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1
Length = 181
Score = 252 bits (643), Expect = 7e-67
Identities = 128/138 (92%), Positives = 129/138 (93%)
Frame = +2
Query: 44 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 223
MG T L RLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLRFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 224 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 403
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV EAR+EL RMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 404 LLVFANKQDLPNAMNPAE 457
LLVFANKQDLPNAMN AE
Sbjct: 121 LLVFANKQDLPNAMNAAE 138
Score = 78.2 bits (191), Expect = 2e-14
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = +3
Query: 459 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 587
ITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS L N++
Sbjct: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANKT 181
>sp|O48649|ARF1_SALBA ADP-ribosylation factor 1
Length = 181
Score = 251 bits (641), Expect = 1e-66
Identities = 127/138 (92%), Positives = 129/138 (93%)
Frame = +2
Query: 44 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 223
MG T LL RLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 224 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 403
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAV 120
Query: 404 LLVFANKQDLPNAMNPAE 457
LLVFANKQDLPNAMN AE
Sbjct: 121 LLVFANKQDLPNAMNAAE 138
Score = 75.9 bits (185), Expect = 9e-14
Identities = 32/43 (74%), Positives = 38/43 (88%)
Frame = +3
Query: 459 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 587
ITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS + +++
Sbjct: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 251 bits (640), Expect = 2e-66
Identities = 125/138 (90%), Positives = 131/138 (94%)
Frame = +2
Query: 44 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 223
MG V+ LL+ LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSVSKLLNGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 224 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 403
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRER+ EAREEL RML+EDELRDA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDAL 120
Query: 404 LLVFANKQDLPNAMNPAE 457
LLVFANKQDLPNAMN AE
Sbjct: 121 LLVFANKQDLPNAMNAAE 138
Score = 80.5 bits (197), Expect = 4e-15
Identities = 36/43 (83%), Positives = 38/43 (88%)
Frame = +3
Query: 459 ITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 587
ITDKLGLHSLR RSWYIQA CATSGDGLYEGL+WLS LK +S
Sbjct: 139 ITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRKS 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,003,225
Number of Sequences: 369166
Number of extensions: 1316275
Number of successful extensions: 4627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4567
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5830600200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)