Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_H04
(886 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 230 5e-60
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 223 4e-58
sp|Q9R014|CATJ_MOUSE Cathepsin J precursor (Cathepsin P) (C... 216 5e-56
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 213 6e-55
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 213 7e-55
sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted ... 212 1e-54
sp|O35186|CATK_RAT Cathepsin K precursor 211 3e-54
sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathe... 210 5e-54
sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Catheps... 210 5e-54
sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine protei... 209 6e-54
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 230 bits (586), Expect = 5e-60
Identities = 114/299 (38%), Positives = 172/299 (57%), Gaps = 6/299 (2%)
Frame = +3
Query: 3 IFNKKYSDETDLIRRNIWEENLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILS 182
++NK+Y+ D RRNIWE+N+K I++HNL+ DLG +++GLN+F+DM +EF++ L+
Sbjct: 27 MYNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLT 86
Query: 183 VXXXXXXXXXXXXXXXXXXLSRNDFITT------PNNIKLPDSWDWREKGAVSPVGNQRN 344
+SR I + NN +PD DWRE G V+ V +Q N
Sbjct: 87 ------------------EMSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGN 128
Query: 345 NSCGYAFAAAGALEGQNFNLTKTLEILSKQQIIDCSIYYGNSGCYGGILSKAYAYLADYG 524
+AF+ G +EGQ +T S+QQ++DCS +GN+GC GG++ AY YL +G
Sbjct: 129 CGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGLMENAYQYLKQFG 188
Query: 525 SELDEDYPFVGCNSNCKYDKSLATVKPYEFKYVSRGKEADLMNAVYNIGPISAAIDASPT 704
E + YP+ C+Y+K L K + V G E +L N V P + A+D +
Sbjct: 189 LETESSYPYTAVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVE-S 247
Query: 705 SFKQYKTGIYDDTSCSSNNVNHAVLVIGYGEESGQSFWIIKNSWGSKWGMKGYMKLSRD 881
F Y++GIY +CS VNHAVL +GYG + G +WI+KNSWG+ WG +GY++++R+
Sbjct: 248 DFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGTYWGERGYIRMARN 306
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 223 bits (569), Expect = 4e-58
Identities = 114/285 (40%), Positives = 165/285 (57%), Gaps = 5/285 (1%)
Frame = +3
Query: 42 RRNIWEENLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXXXXXXXXXX 221
RR +WE+N+K I+ HN ++ GK F++ +N F DM +EF+ +
Sbjct: 48 RRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMM--------------G 93
Query: 222 XXXXXXLSRNDFITTPNNIKLPDSWDWREKGAVSPVGNQRNNSCGYAFAAAGALEGQNFN 401
+ P + LP S DWR+KG V+PV NQ+ +AF+A GALEGQ F
Sbjct: 94 CFRNQKFRKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFR 153
Query: 402 LTKTLEILSKQQIIDCSIYYGNSGCYGGILSKAYAYLADYGS-ELDEDYPFVGCNSNCKY 578
T L LS+Q ++DCS GN GC GG +++A+ Y+ + G + +E YP+V + CKY
Sbjct: 154 KTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKY 213
Query: 579 DKSLATVKPYEFKYVSRGKEADLMNAVYNIGPISAAIDASPTSFKQYKTGIYDDTSCSSN 758
+ F V+ GKE LM AV +GPIS A+DA +SF+ YK+GIY + CSS
Sbjct: 214 RPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSK 273
Query: 759 NVNHAVLVIGYGEESGQS----FWIIKNSWGSKWGMKGYMKLSRD 881
N++H VLV+GYG E S +W++KNSWG +WG GY+K+++D
Sbjct: 274 NLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKD 318
>sp|Q9R014|CATJ_MOUSE Cathepsin J precursor (Cathepsin P) (Catlrp-p)
Length = 333
Score = 216 bits (551), Expect = 5e-56
Identities = 124/302 (41%), Positives = 174/302 (57%), Gaps = 10/302 (3%)
Frame = +3
Query: 6 FNKKYSDETDLIRRNIWEENLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSV 185
+ K YS E + +RR +WEEN++ IK HN + LGK F++ +N+F D +EF+ +I ++
Sbjct: 36 YAKSYSPE-EALRRAVWEENMRMIKLHNKENSLGKNNFTMKMNKFGDQTSEEFRKSIDNI 94
Query: 186 XXXXXXXXXXXXXXXXXXLSRNDFITTPN-----NIKLPDSWDWREKGAVSPVGNQRNNS 350
+T P+ +I LPD DWRE+G V+PV NQ
Sbjct: 95 PIPAA-------------------MTDPHAQNHVSIGLPDYKDWREEGYVTPVRNQGKCG 135
Query: 351 CGYAFAAAGALEGQNFNLTKTLEILSKQQIIDCSIYYGNSGCYGGILSKAYAY-LADYGS 527
+AFAAAGA+EGQ F T L LS Q ++DCS GN GC G +A+ Y L + G
Sbjct: 136 SCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGNKGCQSGTAHQAFEYVLKNKGL 195
Query: 528 ELDEDYPFVGCNSNCKYDKSLATVKPYEFKYVSRGKEADLMNAVYNIGPISAAIDASPTS 707
E + YP+ G + C+Y A+ ++ + E L AV +IGP+SAAIDAS S
Sbjct: 196 EAEATYPYEGKDGPCRYRSENASANITDYVNLP-PNELYLWVAVASIGPVSAAIDASHDS 254
Query: 708 FKQYKTGIYDDTSCSSNNVNHAVLVIGYGEE----SGQSFWIIKNSWGSKWGMKGYMKLS 875
F+ Y GIY + +CSS VNHAVLV+GYG E G ++W+IKNSWG +WGM GYM+++
Sbjct: 255 FRFYNGGIYYEPNCSSYFVNHAVLVVGYGSEGDVKDGNNYWLIKNSWGEEWGMNGYMQIA 314
Query: 876 RD 881
+D
Sbjct: 315 KD 316
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 213 bits (542), Expect = 6e-55
Identities = 115/296 (38%), Positives = 166/296 (56%), Gaps = 5/296 (1%)
Frame = +3
Query: 9 NKKYSDETDLIRRNIWEENLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVX 188
N+ Y + RR +WE+N+K I+ HN ++ GK F++ +N F DM +EF+ +
Sbjct: 37 NRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQ 96
Query: 189 XXXXXXXXXXXXXXXXXLSRNDFITTPNNIKLPDSWDWREKGAVSPVGNQRNNSCGYAFA 368
+ P + P S DWREKG V+PV NQ +AF+
Sbjct: 97 NRKPR--------------KGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFS 142
Query: 369 AAGALEGQNFNLTKTLEILSKQQIIDCSIYYGNSGCYGGILSKAYAYLADYGS-ELDEDY 545
A GALEGQ F T L LS+Q ++DCS GN GC GG++ A+ Y+ D G + +E Y
Sbjct: 143 ATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESY 202
Query: 546 PFVGCNSNCKYDKSLATVKPYEFKYVSRGKEADLMNAVYNIGPISAAIDASPTSFKQYKT 725
P+ +CKY+ + F + + ++A LM AV +GPIS AIDA SF YK
Sbjct: 203 PYEATEESCKYNPKYSVANDTGFVDIPKQEKA-LMKAVATVGPISVAIDAGHESFLFYKE 261
Query: 726 GIYDDTSCSSNNVNHAVLVIGYGEESGQS----FWIIKNSWGSKWGMKGYMKLSRD 881
GIY + CSS +++H VLV+GYG ES +S +W++KNSWG +WGM GY+K+++D
Sbjct: 262 GIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKD 317
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 213 bits (541), Expect = 7e-55
Identities = 114/285 (40%), Positives = 162/285 (56%), Gaps = 5/285 (1%)
Frame = +3
Query: 42 RRNIWEENLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXXXXXXXXXX 221
RR +WE+N+K I+ HN ++ GK F++ +N F DM +EF+ +
Sbjct: 48 RRAVWEKNMKMIELHNREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKH------- 100
Query: 222 XXXXXXLSRNDFITTPNNIKLPDSWDWREKGAVSPVGNQRNNSCGYAFAAAGALEGQNFN 401
+ P ++P S DWREKG V+PV NQ +AF+A GALEGQ F
Sbjct: 101 -------KKGKMFQEPLFAEIPKSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFR 153
Query: 402 LTKTLEILSKQQIIDCSIYYGNSGCYGGILSKAYAYLADYGS-ELDEDYPFVGCNS-NCK 575
T L LS+Q ++DCS GN GC GG++ A+ Y+ D G + +E YP++G ++ C
Sbjct: 154 KTGKLVSLSEQNLVDCSRAQGNEGCNGGLMDNAFRYVKDNGGLDSEESYPYLGRDTETCN 213
Query: 576 YDKSLATVKPYEFKYVSRGKEADLMNAVYNIGPISAAIDASPTSFKQYKTGIYDDTSCSS 755
Y + F + + +E LM AV +GPIS AIDA SF+ YK+GIY D CSS
Sbjct: 214 YKPECSAANDTGFVDLPQ-REKALMKAVATLGPISVAIDAGHQSFQFYKSGIYFDPDCSS 272
Query: 756 NNVNHAVLVIGYGEE---SGQSFWIIKNSWGSKWGMKGYMKLSRD 881
+++H VLV+GYG E S FWI+KNSWG +WG GY+K+++D
Sbjct: 273 KDLDHGVLVVGYGFEGTDSNNKFWIVKNSWGPEWGWNGYVKMAKD 317
>sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted protein) (MEP) (p39 cysteine
proteinase) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 212 bits (540), Expect = 1e-54
Identities = 112/293 (38%), Positives = 168/293 (57%), Gaps = 5/293 (1%)
Frame = +3
Query: 18 YSDETDLIRRNIWEENLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXX 197
Y + RR IWE+N++ I+ HN ++ G+ FS+ +N F DM +EF+ +
Sbjct: 40 YGTNEEEWRRAIWEKNMRMIQLHNGEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQK 99
Query: 198 XXXXXXXXXXXXXXLSRNDFITTPNNIKLPDSWDWREKGAVSPVGNQRNNSCGYAFAAAG 377
+ P +K+P S DWREKG V+PV NQ +AF+A+G
Sbjct: 100 H--------------KKGRLFQEPLMLKIPKSVDWREKGCVTPVKNQGQCGSCWAFSASG 145
Query: 378 ALEGQNFNLTKTLEILSKQQIIDCSIYYGNSGCYGGILSKAYAYLADYGS-ELDEDYPFV 554
LEGQ F T L LS+Q ++DCS GN GC GG++ A+ Y+ + G + +E YP+
Sbjct: 146 CLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYE 205
Query: 555 GCNSNCKYDKSLATVKPYEFKYVSRGKEADLMNAVYNIGPISAAIDASPTSFKQYKTGIY 734
+ +CKY A F + + ++A LM AV +GPIS A+DAS S + Y +GIY
Sbjct: 206 AKDGSCKYRAEFAVANDTGFVDIPQQEKA-LMKAVATVGPISVAMDASHPSLQFYSSGIY 264
Query: 735 DDTSCSSNNVNHAVLVIGYGEESGQS----FWIIKNSWGSKWGMKGYMKLSRD 881
+ +CSS N++H VL++GYG E S +W++KNSWGS+WGM+GY+K+++D
Sbjct: 265 YEPNCSSKNLDHGVLLVGYGYEGTDSNKNKYWLVKNSWGSEWGMEGYIKIAKD 317
>sp|O35186|CATK_RAT Cathepsin K precursor
Length = 329
Score = 211 bits (536), Expect = 3e-54
Identities = 118/293 (40%), Positives = 165/293 (56%), Gaps = 3/293 (1%)
Frame = +3
Query: 12 KKYSDETDLI-RRNIWEENLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVX 188
K+Y+ + D I RR IWE+NLK I HNL+ LG + + +N DM +E + +
Sbjct: 35 KQYNSKVDEISRRLIWEKNLKKISVHNLEASLGAHTYELAMNHLGDMTSEEVVQKMTGLR 94
Query: 189 XXXXXXXXXXXXXXXXXLSRNDFITTPN-NIKLPDSWDWREKGAVSPVGNQRNNSCGYAF 365
ND + TP ++PDS D+R+KG V+PV NQ +AF
Sbjct: 95 VPPSRSFS------------NDTLYTPEWEGRVPDSIDYRKKGYVTPVKNQGQCGSCWAF 142
Query: 366 AAAGALEGQNFNLTKTLEILSKQQIIDCSIYYGNSGCYGGILSKAYAYLADYGSELDED- 542
++AGALEGQ T L LS Q ++DC N GC GG ++ A+ Y+ G ED
Sbjct: 143 SSAGALEGQLKKKTGKLLALSPQNLVDC--VSENYGCGGGYMTTAFQYVQQNGGIDSEDA 200
Query: 543 YPFVGCNSNCKYDKSLATVKPYEFKYVSRGKEADLMNAVYNIGPISAAIDASPTSFKQYK 722
YP+VG + +C Y+ + K ++ + G E L AV +GP+S +IDAS TSF+ Y
Sbjct: 201 YPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPVSVSIDASLTSFQFYS 260
Query: 723 TGIYDDTSCSSNNVNHAVLVIGYGEESGQSFWIIKNSWGSKWGMKGYMKLSRD 881
G+Y D +C +NVNHAVLV+GYG + G +WIIKNSWG WG KGY+ L+R+
Sbjct: 261 RGVYYDENCDRDNVNHAVLVVGYGTQKGNKYWIIKNSWGESWGNKGYVLLARN 313
>sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 339
Score = 210 bits (534), Expect = 5e-54
Identities = 108/293 (36%), Positives = 169/293 (57%), Gaps = 3/293 (1%)
Frame = +3
Query: 12 KKYSDETD-LIRRNIWEENLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVX 188
K Y++E + R I+ EN I +HN F GK + +GLN+++DM EF+ +
Sbjct: 37 KNYANEVEERFRMKIFNENRHKIAKHNQLFAQGKVSYKLGLNKYADMLHHEFKETM---- 92
Query: 189 XXXXXXXXXXXXXXXXXLSRNDFITTPNNIKLPDSWDWREKGAVSPVGNQRNNSCGYAFA 368
L +I P ++ +P S DWRE GAV+ V +Q + +AF+
Sbjct: 93 -NGYNHTLRQLMRERTGLVGATYI-PPAHVTVPKSVDWREHGAVTGVKDQGHCGSCWAFS 150
Query: 369 AAGALEGQNFNLTKTLEILSKQQIIDCSIYYGNSGCYGGILSKAYAYLADYGS-ELDEDY 545
+ GALEGQ+F L LS+Q ++DCS YGN+GC GG++ A+ Y+ D G + ++ Y
Sbjct: 151 STGALEGQHFRKAGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGIDTEKSY 210
Query: 546 PFVGCNSNCKYDKSLATVKPYEFKYVSRGKEADLMNAVYNIGPISAAIDASPTSFKQYKT 725
P+ G + +C ++K+ F + G E + AV +GP+S AIDAS SF+ Y
Sbjct: 211 PYEGIDDSCHFNKATIGATDTGFVDIPEGDEEKMKKAVATMGPVSVAIDASHESFQLYSE 270
Query: 726 GIYDDTSCSSNNVNHAVLVIGYG-EESGQSFWIIKNSWGSKWGMKGYMKLSRD 881
G+Y++ C N++H VLV+GYG +ESG +W++KNSWG+ WG +GY+K++R+
Sbjct: 271 GVYNEPECDEQNLDHGVLVVGYGTDESGMDYWLVKNSWGTTWGEQGYIKMARN 323
>sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 210 bits (534), Expect = 5e-54
Identities = 114/286 (39%), Positives = 162/286 (56%), Gaps = 6/286 (2%)
Frame = +3
Query: 42 RRNIWEENLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXXXXXXXXXX 221
RR +WE+N+K I+ HN ++ GK FS+ +N F DM +EF+ +
Sbjct: 48 RRAVWEKNMKMIELHNQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKH------- 100
Query: 222 XXXXXXLSRNDFITTPNNIKLPDSWDWREKGAVSPVGNQRNNSCGYAFAAAGALEGQNFN 401
+ +++P S DWREKG V+ V NQ +AF+A GALEGQ F
Sbjct: 101 -------KKGKVFHESLVLEVPKSVDWREKGYVTAVKNQGQCGSCWAFSATGALEGQMFR 153
Query: 402 LTKTLEILSKQQIIDCSIYYGNSGCYGGILSKAYAYLADYGS-ELDEDYPFVGCNSN-CK 575
T L LS+Q ++DCS GN GC GG++ A+ Y+ D G + +E YP++G +N C
Sbjct: 154 KTGKLVSLSEQNLVDCSRPQGNQGCNGGLMDNAFQYVKDNGGLDTEESYPYLGRETNSCT 213
Query: 576 YDKSLATVKPYEFKYVSRGKEADLMNAVYNIGPISAAIDASPTSFKQYKTGIYDDTSCSS 755
Y + F + + +E LM AV +GPIS AIDA +SF+ YK+GIY D CSS
Sbjct: 214 YKPECSAANDTGFVDIPQ-REKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSS 272
Query: 756 NNVNHAVLVIGYGEESGQS----FWIIKNSWGSKWGMKGYMKLSRD 881
+++H VLV+GYG E S FWI+KNSWG +WG GY+K+++D
Sbjct: 273 KDLDHGVLVVGYGFEGTDSNSSKFWIVKNSWGPEWGWNGYVKMAKD 318
>sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine proteinase 1) [Contains: Cathepsin
L heavy chain; Cathepsin L light chain]
Length = 341
Score = 209 bits (533), Expect = 6e-54
Identities = 107/293 (36%), Positives = 170/293 (58%), Gaps = 3/293 (1%)
Frame = +3
Query: 12 KKYSDETD-LIRRNIWEENLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVX 188
K Y DET+ R I+ EN I +HN +F GK F + +N+++D+ EF+ +
Sbjct: 38 KNYQDETEERFRLKIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHHEFRQ----LM 93
Query: 189 XXXXXXXXXXXXXXXXXLSRNDFITTPNNIKLPDSWDWREKGAVSPVGNQRNNSCGYAFA 368
FI+ P ++ LP S DWR KGAV+ V +Q + +AF+
Sbjct: 94 NGFNYTLHKQLRAADESFKGVTFIS-PAHVTLPKSVDWRTKGAVTAVKDQGHCGSCWAFS 152
Query: 369 AAGALEGQNFNLTKTLEILSKQQIIDCSIYYGNSGCYGGILSKAYAYLADYGS-ELDEDY 545
+ GALEGQ+F + L LS+Q ++DCS YGN+GC GG++ A+ Y+ D G + ++ Y
Sbjct: 153 STGALEGQHFRKSGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGIDTEKSY 212
Query: 546 PFVGCNSNCKYDKSLATVKPYEFKYVSRGKEADLMNAVYNIGPISAAIDASPTSFKQYKT 725
P+ + +C ++K F + +G E + AV +GP+S AIDAS SF+ Y
Sbjct: 213 PYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFYSE 272
Query: 726 GIYDDTSCSSNNVNHAVLVIGYG-EESGQSFWIIKNSWGSKWGMKGYMKLSRD 881
G+Y++ C + N++H VLV+G+G +ESG+ +W++KNSWG+ WG KG++K+ R+
Sbjct: 273 GVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFIKMLRN 325
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,075,357
Number of Sequences: 369166
Number of extensions: 1574690
Number of successful extensions: 5343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4877
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)