Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_G04
(868 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 197 2e-50
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 196 9e-50
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 195 1e-49
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 194 2e-49
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 193 6e-49
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 193 6e-49
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 193 6e-49
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 192 8e-49
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 190 4e-48
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 189 7e-48
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 197 bits (502), Expect = 2e-50
Identities = 108/146 (73%), Positives = 116/146 (79%)
Frame = +1
Query: 1 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 180
Y+ FFGVMG +SAMVF A+GAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYG
Sbjct: 10 YSSFFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 69
Query: 181 LVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 360
LVVAVLIA + T+ +S IGIVGDAGVRGTAQQPRLFV
Sbjct: 70 LVVAVLIANSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFV 129
Query: 361 GMILILIFAEVLGLYGLIVALILSTK 438
GMILILIFAEVLGLYGLIVALILSTK
Sbjct: 130 GMILILIFAEVLGLYGLIVALILSTK 155
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 196 bits (497), Expect = 9e-50
Identities = 108/149 (72%), Positives = 115/149 (77%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 180
Y PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYG
Sbjct: 7 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 66
Query: 181 LVVAVLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPR 351
LVVAVLIA + NYT+ K H IGIVGDAGVRGTAQQPR
Sbjct: 67 LVVAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 126
Query: 352 LFVGMILILIFAEVLGLYGLIVALILSTK 438
LFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 127 LFVGMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 195 bits (496), Expect = 1e-49
Identities = 107/146 (73%), Positives = 117/146 (80%)
Frame = +1
Query: 1 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 180
Y+ FFGV+G ++AMVF ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYG
Sbjct: 9 YSAFFGVIGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 68
Query: 181 LVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 360
LVVAVLIA + + ++ KS IGIVGDAGVRGTAQQPRLFV
Sbjct: 69 LVVAVLIANSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFV 128
Query: 361 GMILILIFAEVLGLYGLIVALILSTK 438
GMILILIFAEVLGLYGLIVALILSTK
Sbjct: 129 GMILILIFAEVLGLYGLIVALILSTK 154
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 194 bits (494), Expect = 2e-49
Identities = 107/149 (71%), Positives = 115/149 (77%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 180
Y PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYG
Sbjct: 7 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 66
Query: 181 LVVAVLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPR 351
LVVAVLIA + NYT+ + H IGIVGDAGVRGTAQQPR
Sbjct: 67 LVVAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 126
Query: 352 LFVGMILILIFAEVLGLYGLIVALILSTK 438
LFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 127 LFVGMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 193 bits (490), Expect = 6e-49
Identities = 106/146 (72%), Positives = 114/146 (78%)
Frame = +1
Query: 1 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 180
Y FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE IMKSIIPVVMAGIIAIYG
Sbjct: 10 YASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYG 69
Query: 181 LVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 360
LVVAVLIA + + ++ KS IGIVGDAGVRGTAQQPRLFV
Sbjct: 70 LVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFV 129
Query: 361 GMILILIFAEVLGLYGLIVALILSTK 438
GMILILIFAEVLGLYGLIVALILSTK
Sbjct: 130 GMILILIFAEVLGLYGLIVALILSTK 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 193 bits (490), Expect = 6e-49
Identities = 105/146 (71%), Positives = 114/146 (78%)
Frame = +1
Query: 1 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 180
Y FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYG
Sbjct: 10 YASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYG 69
Query: 181 LVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 360
LVVAVLIA + ++ +S IGIVGDAGVRGTAQQPRLFV
Sbjct: 70 LVVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFV 129
Query: 361 GMILILIFAEVLGLYGLIVALILSTK 438
GMILILIFAEVLGLYGLIVALILSTK
Sbjct: 130 GMILILIFAEVLGLYGLIVALILSTK 155
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 193 bits (490), Expect = 6e-49
Identities = 105/146 (71%), Positives = 114/146 (78%)
Frame = +1
Query: 1 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 180
Y FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYG
Sbjct: 10 YASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYG 69
Query: 181 LVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 360
LVVAVLIA + ++ +S IGIVGDAGVRGTAQQPRLFV
Sbjct: 70 LVVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFV 129
Query: 361 GMILILIFAEVLGLYGLIVALILSTK 438
GMILILIFAEVLGLYGLIVALILSTK
Sbjct: 130 GMILILIFAEVLGLYGLIVALILSTK 155
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 192 bits (489), Expect = 8e-49
Identities = 106/148 (71%), Positives = 115/148 (77%), Gaps = 2/148 (1%)
Frame = +1
Query: 1 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 180
Y PFFGVMG +A++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYG
Sbjct: 10 YGPFFGVMGAAAAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 69
Query: 181 LVVAVLIAQQIG--TNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRL 354
LVVAVLIA + T Y++ K H IGIVGDAGVRGTAQQPRL
Sbjct: 70 LVVAVLIAGSLDTPTKYSLYKGFIHLGAGLAVGISGLAAGFAIGIVGDAGVRGTAQQPRL 129
Query: 355 FVGMILILIFAEVLGLYGLIVALILSTK 438
FVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 130 FVGMILILIFAEVLGLYGLIVAIYLYTK 157
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 190 bits (483), Expect = 4e-48
Identities = 105/148 (70%), Positives = 115/148 (77%), Gaps = 2/148 (1%)
Frame = +1
Query: 1 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 180
Y PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYG
Sbjct: 12 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 71
Query: 181 LVVAVLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRL 354
LVVAVLIA + + Y++ + H IGIVGDAGVRGTAQQPRL
Sbjct: 72 LVVAVLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL 131
Query: 355 FVGMILILIFAEVLGLYGLIVALILSTK 438
FVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 132 FVGMILILIFAEVLGLYGLIVAIYLYTK 159
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 189 bits (481), Expect = 7e-48
Identities = 104/148 (70%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
Frame = +1
Query: 1 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 180
Y+PFFGVMG SAMVF ALGAAYGTAKSG GI++M+VMRPELIMK IIPVVMAGIIAIYG
Sbjct: 9 YSPFFGVMGAASAMVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYG 68
Query: 181 LVVAVLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRL 354
LVVAVLIA ++ YT+ + H IGIVGDAGVRGTAQQPRL
Sbjct: 69 LVVAVLIAGKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL 128
Query: 355 FVGMILILIFAEVLGLYGLIVALILSTK 438
+VGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 129 YVGMILILIFAEVLGLYGLIVAIFLYTK 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,780,208
Number of Sequences: 369166
Number of extensions: 1289574
Number of successful extensions: 4057
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3977
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)