Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_F24
(869 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8R5C5|ACTY_MOUSE Beta-centractin (Actin-related protein... 444 e-124
sp|P42025|ACTY_HUMAN Beta-centractin (Actin-related protein... 442 e-124
sp|P61164|ACTZ_MOUSE Alpha-centractin (Centractin) (Centros... 436 e-122
sp|P45889|ACTZ_DROME Actin-like protein 87C 417 e-116
sp|P42023|ACTZ_PNECA Actin-2 (Actin II) (Centractin-like pr... 354 2e-97
sp|P38673|ACTZ_NEUCR Actin-like protein (Centractin) 330 4e-90
sp|P02578|ACT1_ACACA Actin-1 328 2e-89
sp|P10365|ACT_THELA Actin 328 2e-89
sp|P53498|ACT_CHLRE Actin 327 3e-89
sp|P53496|ACT11_ARATH Actin-11 326 4e-89
>sp|Q8R5C5|ACTY_MOUSE Beta-centractin (Actin-related protein 1B) (ARP1B)
Length = 376
Score = 444 bits (1141), Expect = e-124
Identities = 215/272 (79%), Positives = 245/272 (90%)
Frame = +3
Query: 6 SEEHPVLLTEAPLNPLKNREKAAEIFFETFNVPALYISMQAVLSLYATGRTTGVVLDSGD 185
SEEHPVLLTEAPLNP KNREKAAE+FFETFNVPAL+ISMQAVLSLYATGRTTGVVLDSGD
Sbjct: 103 SEEHPVLLTEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGD 162
Query: 186 GVTHAVPIYEGFALQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKAC 365
GVTHAVPIYEGFA+ H+IMR DIAGRDVSRYLRLLLRKEG F TSAEFE+VR +KE+AC
Sbjct: 163 GVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEGADFHTSAEFEVVRTIKERAC 222
Query: 366 FLSANPEMQEQSEIDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYS 545
+LS NP+ E E + Y LPDGS L +G A+FRAPELLF+PDL+G E +G+HEVLA++
Sbjct: 223 YLSINPQKDEALETEKVQYTLPDGSTLDVGPARFRAPELLFQPDLVGDESEGLHEVLAFA 282
Query: 546 IQKSDMDLRQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWI 725
I KSDMDLR+ L+ NIVLSGGSTLFKGFGDR+LSE+KKLAPKD KI+ISAPQERLYSTWI
Sbjct: 283 IHKSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIKISAPQERLYSTWI 342
Query: 726 GGSILASLDTFRRMWISKREFEDDGYRALHRK 821
GGSILASLDTF++MW+SK+E+E+DG RA+HRK
Sbjct: 343 GGSILASLDTFKKMWVSKKEYEEDGSRAIHRK 374
>sp|P42025|ACTY_HUMAN Beta-centractin (Actin-related protein 1B) (ARP1B)
Length = 376
Score = 442 bits (1138), Expect = e-124
Identities = 214/272 (78%), Positives = 245/272 (90%)
Frame = +3
Query: 6 SEEHPVLLTEAPLNPLKNREKAAEIFFETFNVPALYISMQAVLSLYATGRTTGVVLDSGD 185
SEEHPVLLTEAPLNP KNREKAAE+FFETFNVPAL+ISMQAVLSLYATGRTTGVVLDSGD
Sbjct: 103 SEEHPVLLTEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGD 162
Query: 186 GVTHAVPIYEGFALQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKAC 365
GVTHAVPIYEGFA+ H+IMR DIAGRDVSRYLRLLLRKEG F TSAEFE+VR +KE+AC
Sbjct: 163 GVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEGVDFHTSAEFEVVRTIKERAC 222
Query: 366 FLSANPEMQEQSEIDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYS 545
+LS NP+ E E + Y LPDGS L +G A+FRAPELLF+PDL+G E +G+HEV+A++
Sbjct: 223 YLSINPQKDEALETEKVQYTLPDGSTLDVGPARFRAPELLFQPDLVGDESEGLHEVVAFA 282
Query: 546 IQKSDMDLRQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWI 725
I KSDMDLR+ L+ NIVLSGGSTLFKGFGDR+LSE+KKLAPKD KI+ISAPQERLYSTWI
Sbjct: 283 IHKSDMDLRRTLFANIVLSGGSTLFKGFGDRLLSEVKKLAPKDIKIKISAPQERLYSTWI 342
Query: 726 GGSILASLDTFRRMWISKREFEDDGYRALHRK 821
GGSILASLDTF++MW+SK+E+E+DG RA+HRK
Sbjct: 343 GGSILASLDTFKKMWVSKKEYEEDGSRAIHRK 374
>sp|P61164|ACTZ_MOUSE Alpha-centractin (Centractin) (Centrosome-associated actin homolog)
(Actin-RPV) (ARP1)
sp|P61163|ACTZ_HUMAN Alpha-centractin (Centractin) (Centrosome-associated actin homolog)
(Actin-RPV) (ARP1)
sp|P61162|ACTZ_CANFA Alpha-centractin (Centractin) (Centrosome-associated actin homolog)
(Actin-RPV) (ARP1)
Length = 376
Score = 436 bits (1121), Expect = e-122
Identities = 212/272 (77%), Positives = 244/272 (89%)
Frame = +3
Query: 6 SEEHPVLLTEAPLNPLKNREKAAEIFFETFNVPALYISMQAVLSLYATGRTTGVVLDSGD 185
SEEHPVLLTEAPLNP KNRE+AAE+FFETFNVPAL+ISMQAVLSLYATGRTTGVVLDSGD
Sbjct: 103 SEEHPVLLTEAPLNPRKNRERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGD 162
Query: 186 GVTHAVPIYEGFALQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKAC 365
GVTHAVPIYEGFA+ H+IMR DIAGRDVSR+LRL LRKEG F +S+EFEIV+ +KE+AC
Sbjct: 163 GVTHAVPIYEGFAMPHSIMRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERAC 222
Query: 366 FLSANPEMQEQSEIDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYS 545
+LS NP+ E E + Y LPDGS + IG ++FRAPELLFRPDLIG E +GIHEVL ++
Sbjct: 223 YLSINPQKDETLETEKAQYYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFA 282
Query: 546 IQKSDMDLRQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWI 725
IQKSDMDLR+ L+ NIVLSGGSTLFKGFGDR+LSE+KKLAPKD KIRISAPQERLYSTWI
Sbjct: 283 IQKSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWI 342
Query: 726 GGSILASLDTFRRMWISKREFEDDGYRALHRK 821
GGSILASLDTF++MW+SK+E+E+DG R++HRK
Sbjct: 343 GGSILASLDTFKKMWVSKKEYEEDGARSIHRK 374
>sp|P45889|ACTZ_DROME Actin-like protein 87C
Length = 376
Score = 417 bits (1073), Expect = e-116
Identities = 199/272 (73%), Positives = 239/272 (87%)
Frame = +3
Query: 6 SEEHPVLLTEAPLNPLKNREKAAEIFFETFNVPALYISMQAVLSLYATGRTTGVVLDSGD 185
+E+HPVLLTEAPLNP +NREKAAE FFE N PAL++SMQAVLSLYATGR TGVVLDSGD
Sbjct: 103 TEDHPVLLTEAPLNPRRNREKAAEFFFEGINAPALFVSMQAVLSLYATGRVTGVVLDSGD 162
Query: 186 GVTHAVPIYEGFALQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKAC 365
GVTHAVPIYEGFA+ H+IMR DIAGRDV+RYL+ L+R+EG +F+++AEFEIVR +KEK C
Sbjct: 163 GVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLKTLIRREGFNFRSTAEFEIVRSIKEKVC 222
Query: 366 FLSANPEMQEQSEIDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYS 545
+L+ NP+ +E E + Y LPDG IG A+FRAPE+LFRPDL+G EC+GIH+VL YS
Sbjct: 223 YLATNPQKEETVETEKFAYKLPDGKIFEIGPARFRAPEVLFRPDLLGEECEGIHDVLMYS 282
Query: 546 IQKSDMDLRQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWI 725
I+KSDMDLR++LY NIVLSGGSTLFKGFGDR+LSELKK + KD KIRI+APQERLYSTW+
Sbjct: 283 IEKSDMDLRKMLYQNIVLSGGSTLFKGFGDRLLSELKKHSAKDLKIRIAAPQERLYSTWM 342
Query: 726 GGSILASLDTFRRMWISKREFEDDGYRALHRK 821
GGSILASLDTF++MWISKRE+E++G +A+HRK
Sbjct: 343 GGSILASLDTFKKMWISKREYEEEGQKAVHRK 374
>sp|P42023|ACTZ_PNECA Actin-2 (Actin II) (Centractin-like protein)
Length = 385
Score = 354 bits (908), Expect = 2e-97
Identities = 180/283 (63%), Positives = 224/283 (79%), Gaps = 11/283 (3%)
Frame = +3
Query: 6 SEEHPVLLTEAPLNPLKNREKAAEIFFETFNVPALYISMQAVLSLYATGRTTGVVLDSGD 185
SEEHPVLLTEAPLNP NR++AA++FFETFNVPAL+ S+QAVLSLYA+GRTTGVVLDSGD
Sbjct: 102 SEEHPVLLTEAPLNPRTNRDQAAQVFFETFNVPALFTSIQAVLSLYASGRTTGVVLDSGD 161
Query: 186 GVTHAVPIYEGFALQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKAC 365
GVTHAVPIYEGFA+ AI R DIAGRDV+ YL+LLLRK GT F TSAE EIVR +KEK
Sbjct: 162 GVTHAVPIYEGFAMPSAIRRIDIAGRDVTEYLQLLLRKSGTIFHTSAEKEIVRIIKEKCS 221
Query: 366 FLSANPEMQEQSEID-----------NTTYPLPDGSKLRIGGAKFRAPELLFRPDLIGSE 512
+++ +P +E+ I+ + LPDG+ LR+G +FRAPE+LF P++IGSE
Sbjct: 222 YVTLDPRKEEKEWINASISGGKDYTKEEEFKLPDGNVLRLGAERFRAPEILFDPEIIGSE 281
Query: 513 CDGIHEVLAYSIQKSDMDLRQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRIS 692
GIH+V+ +I + D+DLR+ L+GNIVLSGGSTL +GFGDR+LSE+++LA KD KI+I
Sbjct: 282 YSGIHQVVVDAISRVDLDLRKSLFGNIVLSGGSTLTRGFGDRLLSEIRRLAVKDVKIKIF 341
Query: 693 APQERLYSTWIGGSILASLDTFRRMWISKREFEDDGYRALHRK 821
AP ER YSTWIGGSILASL TFR+MW+S E+++D +HRK
Sbjct: 342 APPERKYSTWIGGSILASLSTFRKMWVSAEEYQEDP-DIIHRK 383
>sp|P38673|ACTZ_NEUCR Actin-like protein (Centractin)
Length = 380
Score = 330 bits (845), Expect = 4e-90
Identities = 164/271 (60%), Positives = 214/271 (78%), Gaps = 7/271 (2%)
Frame = +3
Query: 6 SEEHPVLLTEAPLNPLKNREKAAEIFFETFNVPALYISMQAVLSLYATGRTTGVVLDSGD 185
SEEHPVLLTE PLNP NR+ AA+I FETFNVPALY S+QAVLSLYA+GRTTGVVLDSGD
Sbjct: 101 SEEHPVLLTEPPLNPRANRDTAAQILFETFNVPALYTSIQAVLSLYASGRTTGVVLDSGD 160
Query: 186 GVTHAVPIYEGFALQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKAC 365
GV+HAVP+Y+GF + ++I R D+AGRDV+ YL+ LLRK G F TSAE E+VR +KE
Sbjct: 161 GVSHAVPVYQGFTVPNSIRRIDVAGRDVTEYLQTLLRKSGYVFHTSAEKEVVRLIKESVT 220
Query: 366 FLSANPEMQEQ----SEIDN---TTYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGI 524
+++ +P +E+ +++D Y LPDG+KL+IG +FRAPE+LF P++IG E G+
Sbjct: 221 YVAHDPRKEEKEWAAAKMDPAKIAEYVLPDGNKLKIGAERFRAPEILFDPEIIGLEYPGV 280
Query: 525 HEVLAYSIQKSDMDLRQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQE 704
H+++ SI ++D+DLR+ LY NIVLSGGSTL KGFGDR+L+E++KLA KD +I+I AP E
Sbjct: 281 HQIVVDSINRTDLDLRRDLYSNIVLSGGSTLTKGFGDRLLTEVQKLAVKDMRIKIFAPPE 340
Query: 705 RLYSTWIGGSILASLDTFRRMWISKREFEDD 797
R YSTWIGGSILA L TFR+MW+S ++ ++
Sbjct: 341 RKYSTWIGGSILAGLSTFRKMWVSIDDWHEN 371
>sp|P02578|ACT1_ACACA Actin-1
Length = 375
Score = 328 bits (840), Expect = 2e-89
Identities = 161/275 (58%), Positives = 204/275 (74%), Gaps = 4/275 (1%)
Frame = +3
Query: 9 EEHPVLLTEAPLNPLKNREKAAEIFFETFNVPALYISMQAVLSLYATGRTTGVVLDSGDG 188
EEHPVLLTEAPLNP NREK +I FETFN PA+Y+++QAVLSLYA+GRTTG+VLDSGDG
Sbjct: 99 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG 158
Query: 189 VTHAVPIYEGFALQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACF 368
VTH VPIYEG+AL HAI+R D+AGRD++ YL +L + G F T+AE EIVR +KEK C+
Sbjct: 159 VTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY 218
Query: 369 LSANPEMQEQSEIDNT----TYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVL 536
++ + E + + ++ +Y LPDG + IG +FRAPE LF+P +G E GIHE
Sbjct: 219 VALDFEQEMHTAASSSALEKSYELPDGQVITIGNERFRAPEALFQPSFLGMESAGIHETT 278
Query: 537 AYSIQKSDMDLRQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYS 716
SI K D+D+R+ LYGN+VLSGG+T+F G DR+ EL LAP KI+I AP ER YS
Sbjct: 279 YNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMQKELTALAPSTMKIKIIAPPERKYS 338
Query: 717 TWIGGSILASLDTFRRMWISKREFEDDGYRALHRK 821
WIGGSILASL TF++MWISK E+++ G +HRK
Sbjct: 339 VWIGGSILASLSTFQQMWISKEEYDESGPSIVHRK 373
>sp|P10365|ACT_THELA Actin
Length = 375
Score = 328 bits (840), Expect = 2e-89
Identities = 163/275 (59%), Positives = 204/275 (74%), Gaps = 4/275 (1%)
Frame = +3
Query: 9 EEHPVLLTEAPLNPLKNREKAAEIFFETFNVPALYISMQAVLSLYATGRTTGVVLDSGDG 188
EEHPVLLTEAP+NP NREK +I FETFN PA Y+S+QAVLSLYA+GRTTG+VLDSGDG
Sbjct: 99 EEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDG 158
Query: 189 VTHAVPIYEGFALQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACF 368
VTH VPIYEGFAL HAI R DIAGRD++ YL +L + G F T+AE EIVR +KEK C+
Sbjct: 159 VTHTVPIYEGFALTHAISRIDIAGRDLTDYLMKILAERGYSFTTTAEREIVRDIKEKLCY 218
Query: 369 LSANPEMQEQSEIDNTT----YPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVL 536
++ + E + Q+ ++T Y LPDG + IG +FRAPE LF P ++G E GIHE
Sbjct: 219 VAFDFEQELQTAAQSSTLEKSYELPDGQVITIGNERFRAPEALFNPAVLGHESGGIHETT 278
Query: 537 AYSIQKSDMDLRQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYS 716
SI K D+D+R+ LYGNIV+SGG+T++ G DR+ EL LAP KI+I AP ER YS
Sbjct: 279 FNSIIKCDVDVRKDLYGNIVMSGGTTMYPGIADRMQKELTALAPSSMKIKIIAPPERKYS 338
Query: 717 TWIGGSILASLDTFRRMWISKREFEDDGYRALHRK 821
WIGGSILASL TF++MW+SK+E+++ G +HRK
Sbjct: 339 VWIGGSILASLSTFQQMWVSKQEYDESGPSIVHRK 373
>sp|P53498|ACT_CHLRE Actin
Length = 377
Score = 327 bits (837), Expect = 3e-89
Identities = 159/275 (57%), Positives = 206/275 (74%), Gaps = 4/275 (1%)
Frame = +3
Query: 9 EEHPVLLTEAPLNPLKNREKAAEIFFETFNVPALYISMQAVLSLYATGRTTGVVLDSGDG 188
EEHPVLLTEAPLNP NREK +I FETFNVPA+Y+++QAVLSLYA+GRTTG+VLDSGDG
Sbjct: 101 EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDG 160
Query: 189 VTHAVPIYEGFALQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACF 368
VTH VPIYEG+AL HAI+R D+AGRD++ YL +L + G F T+AE EIVR +KEK C+
Sbjct: 161 VTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILMERGYSFTTTAEREIVRDIKEKLCY 220
Query: 369 LSANPEMQEQSEIDNT----TYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVL 536
++ + E + + + ++ TY LPDG + IG +FR PE+LF P++IG E GIH+
Sbjct: 221 VALDFEQEMATALSSSALEKTYELPDGQMITIGNERFRCPEVLFNPNMIGMEAVGIHDTT 280
Query: 537 AYSIQKSDMDLRQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYS 716
SI K D+D+R+ LY NIVLSGG+T+F G DR+ E+ LAP KI++ AP ER YS
Sbjct: 281 FNSIMKCDVDIRKDLYNNIVLSGGTTMFPGIADRMSKEITALAPSAMKIKVVAPPERKYS 340
Query: 717 TWIGGSILASLDTFRRMWISKREFEDDGYRALHRK 821
WIGGSILASL TF++MWI+K E+++ G +HRK
Sbjct: 341 VWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRK 375
>sp|P53496|ACT11_ARATH Actin-11
Length = 377
Score = 326 bits (836), Expect = 4e-89
Identities = 161/277 (58%), Positives = 206/277 (74%), Gaps = 6/277 (2%)
Frame = +3
Query: 9 EEHPVLLTEAPLNPLKNREKAAEIFFETFNVPALYISMQAVLSLYATGRTTGVVLDSGDG 188
EEHPVLLTEAPLNP NREK +I FETFN PA+Y+++QAVLSLYA+GRTTG+VLDSGDG
Sbjct: 101 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG 160
Query: 189 VTHAVPIYEGFALQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACF 368
V+H VPIYEG+AL HAI+R D+AGRD++ YL +L + G F TSAE EIVR +KEK +
Sbjct: 161 VSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTSAEREIVRDVKEKLAY 220
Query: 369 LSANPEMQEQSEIDNT------TYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHE 530
++ + +++ E NT +Y LPDG + IGG +FR PE+LF+P L+G E GIHE
Sbjct: 221 IAL--DYEQEMETANTSSSVEKSYELPDGQVITIGGERFRCPEVLFQPSLVGMEAAGIHE 278
Query: 531 VLAYSIQKSDMDLRQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERL 710
SI K D+D+R+ LYGNIVLSGG+T+F G DR+ E+ LAP KI++ AP ER
Sbjct: 279 TTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERK 338
Query: 711 YSTWIGGSILASLDTFRRMWISKREFEDDGYRALHRK 821
YS WIGGSILASL TF++MWI+K E+++ G +HRK
Sbjct: 339 YSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRK 375
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,924,962
Number of Sequences: 369166
Number of extensions: 2487831
Number of successful extensions: 7301
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6933
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)