Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_F16
(211 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6SA95|FA9_FELCA Coagulation factor IX precursor (Christ... 30 1.7
sp|P29187|TXSHK_STOHE Potassium channel toxin ShK 30 2.3
sp|P57620|EX1_BUCAI Exodeoxyribonuclease I (Exonuclease I) ... 30 2.3
sp|P19540|FA9_CANFA Coagulation factor IX precursor (Christ... 29 2.9
sp|Q19269|NAS14_CAEEL Zinc metalloproteinase nas-14 precurs... 29 2.9
sp|P16293|FA9_PIG Coagulation factor IX (Christmas factor) ... 29 2.9
sp|Q91ZC6|MRGA6_MOUSE Mas-related G-protein coupled recepto... 29 3.8
sp|P00741|FA9_BOVIN Coagulation factor IX (Christmas factor... 29 3.8
sp|O96785|HUNB_CLOAL Hunchback protein 28 5.0
sp|P35209|SPT21_YEAST SPT21 protein 28 6.5
>sp|Q6SA95|FA9_FELCA Coagulation factor IX precursor (Christmas factor) [Contains:
Coagulation factor IXa light chain; Coagulation factor
IXa heavy chain]
Length = 466
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Frame = +2
Query: 50 KEKINSAKLFCESNY--KHCKK--SCGIFSGHCKKNCK 151
K+ INS + +C++ + K+C+ +C I +G CK+ CK
Sbjct: 109 KDDINSYECWCQTGFEGKNCELDVTCNIKNGRCKQFCK 146
>sp|P29187|TXSHK_STOHE Potassium channel toxin ShK
Length = 35
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 104 KKSCGIFSGHCKKNCKYRLKYCKSTC 181
K C F CK + KYRL +C+ TC
Sbjct: 9 KSRCTAFQ--CKHSMKYRLSFCRKTC 32
>sp|P57620|EX1_BUCAI Exodeoxyribonuclease I (Exonuclease I) (DNA
deoxyribophosphodiesterase) (dRPase)
Length = 413
Score = 29.6 bits (65), Expect = 2.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -3
Query: 194 LLNFNKCFYNISIGICNSSCNDQKIYHMISYNACNCFHKIAL--QNLFFPSTSELVYSKN 21
LL+ N+C I + ++ +H S N KI L +N+FF ++++SKN
Sbjct: 295 LLHLNRCPILAPIQVIRKEDYNRLNFHRFSLNK-----KIELIKKNMFFIQNIKIIFSKN 349
Query: 20 NN 15
NN
Sbjct: 350 NN 351
>sp|P19540|FA9_CANFA Coagulation factor IX precursor (Christmas factor) [Contains:
Coagulation factor IXa light chain; Coagulation factor
IXa heavy chain]
Length = 452
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +2
Query: 50 KEKINSAKLFCESNY--KHCKK--SCGIFSGHCKKNCK 151
K+ INS + +C + + K+C+ +C I +G CK+ CK
Sbjct: 102 KDDINSYECWCRAGFEGKNCELDVTCNIKNGRCKQFCK 139
>sp|Q19269|NAS14_CAEEL Zinc metalloproteinase nas-14 precursor (Nematode astacin 14)
Length = 503
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 80 CESNYKHCKKSCGIFS--GHCKKNCKYRLKYCKSTC 181
CE HC G++ GHC+ + KY YC+ C
Sbjct: 380 CEDLNAHC----GMWEQLGHCQHSVKYMAHYCRKAC 411
>sp|P16293|FA9_PIG Coagulation factor IX (Christmas factor) [Contains: Coagulation
factor IXa light chain; Coagulation factor IXa heavy
chain]
Length = 409
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +2
Query: 50 KEKINSAKLFCESNY--KHCK--KSCGIFSGHCKKNCK 151
K+ INS + +C+ + K+C+ +C I +G CK+ CK
Sbjct: 64 KDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCK 101
>sp|Q91ZC6|MRGA6_MOUSE Mas-related G-protein coupled receptor member A6
Length = 301
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -1
Query: 139 LAMTRKYTT*FLTMLVIAFTK*LCRIYFFLL--LQNLYTV 26
+ +TR Y T LT+LV C Y+FLL ++N++TV
Sbjct: 195 MKLTRLYVTITLTLLVFLLCGLPCGFYWFLLSKIKNVFTV 234
>sp|P00741|FA9_BOVIN Coagulation factor IX (Christmas factor) [Contains: Coagulation
factor IXa light chain; Coagulation factor IXa heavy
chain]
Length = 416
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Frame = +2
Query: 50 KEKINSAKLFCESNYK--HCK--KSCGIFSGHCKKNCK 151
K+ INS + +C++ ++ +C+ +C I +G CK+ CK
Sbjct: 63 KDDINSYECWCQAGFEGTNCELDATCSIKNGRCKQFCK 100
>sp|O96785|HUNB_CLOAL Hunchback protein
Length = 485
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 5 RCFDCYFYCIQVLK*KEKINSAKLFCESNYKHCKKSCGIFSGHCKKNCKYRLKYCKS 175
+C C + C+ K +NS H K I+ CK +C Y KYC S
Sbjct: 145 QCKQCNYSCVN----KSMLNS----------HMKSHSNIYQYRCK-DCNYATKYCHS 186
>sp|P35209|SPT21_YEAST SPT21 protein
Length = 758
Score = 28.1 bits (61), Expect = 6.5
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = -3
Query: 188 NFNKCFYNISIGICNSSCNDQKIYHMISYNACNCFHKIALQNLFFPSTSELVYSKNNNQS 9
NFN F+ S N Q + I+ N N + IAL+N SEL ++NN S
Sbjct: 505 NFNCNFFESPTSASASQLNQQNLKPSITLNDPNTCNTIALEN---EDVSELETAQNNKIS 561
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,085,628
Number of Sequences: 369166
Number of extensions: 386201
Number of successful extensions: 1374
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 68,354,980
effective HSP length: 41
effective length of database: 60,780,845
effective search space used: 1701863660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)