Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_F10
(376 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9MTH5|YCF1_OENHO Hypothetical 287.9 kDa protein ycf1 33 0.16
sp|P53935|YNJ1_YEAST Hypothetical 141.5 kDa protein in YPT5... 33 0.20
sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplast ... 33 0.27
sp|O14617|AP3D1_HUMAN Adapter-related protein complex 3 del... 31 1.0
sp|P31106|MIP_LEGMI Outer membrane protein MIP precursor (M... 30 1.3
sp|P38344|YB9M_YEAST 45.8 kDa protein in SHM1-MRPL37 interg... 30 1.3
sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor 30 1.3
sp|P31563|YCF1_OENBE Hypothetical protein ycf1 (ORF 1005) 30 1.3
sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6) 30 1.3
sp|Q13061|TRDN_HUMAN Triadin 30 1.7
>sp|Q9MTH5|YCF1_OENHO Hypothetical 287.9 kDa protein ycf1
Length = 2434
Score = 33.5 bits (75), Expect = 0.16
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 210 RISAKKNKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPKLCNEIKR 371
+IS K K + SK++ K + N++ ++ +SKQ ++ I + NEIKR
Sbjct: 770 KISKSKQKNVKSKQKNVKSKQKNVKSKQKNVKSKQNEIKRKVNEIKRKVNEIKR 823
Score = 32.3 bits (72), Expect = 0.35
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 213 ISAKKNKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPKLCNEIKR 371
+ KK K SK++ K + N++ ++ +SKQK + I + NEIKR
Sbjct: 764 VPKKKKKISKSKQKNVKSKQKNVKSKQKNVKSKQKNVKSKQNEIKRKVNEIKR 816
>sp|P53935|YNJ1_YEAST Hypothetical 141.5 kDa protein in YPT53-RHO2 intergenic region
Length = 1240
Score = 33.1 bits (74), Expect = 0.20
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +3
Query: 51 KSEHNELLEMLEKDETKRIIEDKKFTFKT-VEEIEMKXXXXXXXXXXXXXXXSTRISAKK 227
K + + L+ L K+E KR E++K K +EE EM+ + R ++
Sbjct: 651 KEKEKKRLQQLAKEEEKRKREEEKERLKKELEEREMRRRE------------AQRKKVEE 698
Query: 228 NKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPK 350
K +ERKR+L + Q+++ KQK E R K
Sbjct: 699 AKRKKDEERKRRLEEQQRREEMQEKQRKQKEELKRKREEEK 739
>sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplast precursor (VARIEGATED 3
protein)
Length = 758
Score = 32.7 bits (73), Expect = 0.27
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 9 PSEIIHPGTSWFPVKSEHNELLEMLEKDETKRIIED-KKFTFKT 137
P E++ P + + E ELLEML + + + ++E+ K F FKT
Sbjct: 126 PDELLRPALACLALARERPELLEMLSRRDVEVLVENGKPFLFKT 169
>sp|O14617|AP3D1_HUMAN Adapter-related protein complex 3 delta 1 subunit (Delta-adaptin 3)
(AP-3 complex delta subunit) (Delta-adaptin)
Length = 1153
Score = 30.8 bits (68), Expect = 1.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 204 STRISAKKNKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPK 350
+T S K + E+K K K + +K+KER K+K + E + PK
Sbjct: 823 NTETSKSPEKDVPMVEKKSKKPKKKEKKHKEKERDKEKKKEKEKKKSPK 871
>sp|P31106|MIP_LEGMI Outer membrane protein MIP precursor (Macrophage infectivity
potentiator) (Peptidyl-prolyl cis-trans isomerase)
(PPIase) (Rotamase)
Length = 243
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 231 KPLTSKERKRKLMKMNLEMNKQKERSKQKGEA 326
K + +K +K +MK + E NK+ E +K KGEA
Sbjct: 88 KDVLNKFQKDLMMKRSAEFNKKAEENKSKGEA 119
>sp|P38344|YB9M_YEAST 45.8 kDa protein in SHM1-MRPL37 intergenic region
Length = 393
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 204 STRISAKKNKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPK 350
ST SA+K KP+T KE KR+ + LE +K++ + A+ L N+ K
Sbjct: 60 STSKSAEKEKPVTKKELKRREKQALLE---KKKKLLEIARANMLENMQK 105
>sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor
Length = 678
Score = 30.4 bits (67), Expect = 1.3
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +3
Query: 57 EHNELLEMLEKDETKRIIEDKKFTFKTVEEIEMKXXXXXXXXXXXXXXXSTRISAKKNKP 236
+ E+L+ L+K E K+ K+ K E+IE K + K+ K
Sbjct: 252 QQEEMLKTLDKKERKQ----KEKEMKEQEKIEKKKKKQEEK--------EKKKQEKERKK 299
Query: 237 LTSKERKRKLMKMNLEMNKQKERSKQK 317
KERK+K +M + +KER K++
Sbjct: 300 QEKKERKQKEKEMKKQKKIEKERKKKE 326
>sp|P31563|YCF1_OENBE Hypothetical protein ycf1 (ORF 1005)
Length = 1005
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 213 ISAKKNKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPKLCNEIK 368
IS K + SK++K K + ++ ++K +SKQK + I NEIK
Sbjct: 772 ISKSKQNEIKSKQKKVKSKQKKVKSKQKKVKSKQKKVKSKQNEIKSKQNEIK 823
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 225 KNKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPKLCNEIKR 371
K K + SK++K K + ++ + + +SKQK + I NE+KR
Sbjct: 797 KQKKVKSKQKKVKSKQNEIKSKQNEIKSKQKKVKRKQNEIKSKLNEVKR 845
>sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6)
Length = 229
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -3
Query: 230 IFLCADSC*FLHFNSFL-----LDIIFIRFHLDFFDCF 132
+FL C F FN+ L +D+ FIRF L F +CF
Sbjct: 96 LFLFCFLCDFFLFNNLLVGDSFMDVFFIRFLLCFLECF 133
>sp|Q13061|TRDN_HUMAN Triadin
Length = 729
Score = 30.0 bits (66), Expect = 1.7
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Frame = +3
Query: 51 KSEHNELLEMLEKDETKRIIEDKKFTFKTVEEIEMKXXXXXXXXXXXXXXXSTRISAKKN 230
K+ H E +E EK ETK + +++K KT E+ E K T+ K
Sbjct: 183 KATHKEKIEKKEKPETKTVAKEQK-KAKTAEKSEEK----------------TKKEVKGG 225
Query: 231 KPLTSKERKRKLMKMNLEMNKQKERSKQKGEA---HELRNIPKLC 356
K K+ K+ ++ +K KE+ ++ A HE ++ C
Sbjct: 226 KQEKVKQTAAKVKEVQKTPSKPKEKEDKEKAAVSKHEQKDQYAFC 270
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,759,455
Number of Sequences: 369166
Number of extensions: 407697
Number of successful extensions: 1932
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1910
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)