Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_001_F10 (376 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9MTH5|YCF1_OENHO Hypothetical 287.9 kDa protein ycf1 33 0.16 sp|P53935|YNJ1_YEAST Hypothetical 141.5 kDa protein in YPT5... 33 0.20 sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplast ... 33 0.27 sp|O14617|AP3D1_HUMAN Adapter-related protein complex 3 del... 31 1.0 sp|P31106|MIP_LEGMI Outer membrane protein MIP precursor (M... 30 1.3 sp|P38344|YB9M_YEAST 45.8 kDa protein in SHM1-MRPL37 interg... 30 1.3 sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor 30 1.3 sp|P31563|YCF1_OENBE Hypothetical protein ycf1 (ORF 1005) 30 1.3 sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6) 30 1.3 sp|Q13061|TRDN_HUMAN Triadin 30 1.7
>sp|Q9MTH5|YCF1_OENHO Hypothetical 287.9 kDa protein ycf1 Length = 2434 Score = 33.5 bits (75), Expect = 0.16 Identities = 17/54 (31%), Positives = 30/54 (55%) Frame = +3 Query: 210 RISAKKNKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPKLCNEIKR 371 +IS K K + SK++ K + N++ ++ +SKQ ++ I + NEIKR Sbjct: 770 KISKSKQKNVKSKQKNVKSKQKNVKSKQKNVKSKQNEIKRKVNEIKRKVNEIKR 823
Score = 32.3 bits (72), Expect = 0.35 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +3 Query: 213 ISAKKNKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPKLCNEIKR 371 + KK K SK++ K + N++ ++ +SKQK + I + NEIKR Sbjct: 764 VPKKKKKISKSKQKNVKSKQKNVKSKQKNVKSKQKNVKSKQNEIKRKVNEIKR 816
>sp|P53935|YNJ1_YEAST Hypothetical 141.5 kDa protein in YPT53-RHO2 intergenic region Length = 1240 Score = 33.1 bits (74), Expect = 0.20 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 1/101 (0%) Frame = +3 Query: 51 KSEHNELLEMLEKDETKRIIEDKKFTFKT-VEEIEMKXXXXXXXXXXXXXXXSTRISAKK 227 K + + L+ L K+E KR E++K K +EE EM+ + R ++ Sbjct: 651 KEKEKKRLQQLAKEEEKRKREEEKERLKKELEEREMRRRE------------AQRKKVEE 698 Query: 228 NKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPK 350 K +ERKR+L + Q+++ KQK E R K Sbjct: 699 AKRKKDEERKRRLEEQQRREEMQEKQRKQKEELKRKREEEK 739
>sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplast precursor (VARIEGATED 3 protein) Length = 758 Score = 32.7 bits (73), Expect = 0.27 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = +3 Query: 9 PSEIIHPGTSWFPVKSEHNELLEMLEKDETKRIIED-KKFTFKT 137 P E++ P + + E ELLEML + + + ++E+ K F FKT Sbjct: 126 PDELLRPALACLALARERPELLEMLSRRDVEVLVENGKPFLFKT 169
>sp|O14617|AP3D1_HUMAN Adapter-related protein complex 3 delta 1 subunit (Delta-adaptin 3) (AP-3 complex delta subunit) (Delta-adaptin) Length = 1153 Score = 30.8 bits (68), Expect = 1.0 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +3 Query: 204 STRISAKKNKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPK 350 +T S K + E+K K K + +K+KER K+K + E + PK Sbjct: 823 NTETSKSPEKDVPMVEKKSKKPKKKEKKHKEKERDKEKKKEKEKKKSPK 871
>sp|P31106|MIP_LEGMI Outer membrane protein MIP precursor (Macrophage infectivity potentiator) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) Length = 243 Score = 30.4 bits (67), Expect = 1.3 Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = +3 Query: 231 KPLTSKERKRKLMKMNLEMNKQKERSKQKGEA 326 K + +K +K +MK + E NK+ E +K KGEA Sbjct: 88 KDVLNKFQKDLMMKRSAEFNKKAEENKSKGEA 119
>sp|P38344|YB9M_YEAST 45.8 kDa protein in SHM1-MRPL37 intergenic region Length = 393 Score = 30.4 bits (67), Expect = 1.3 Identities = 19/49 (38%), Positives = 29/49 (59%) Frame = +3 Query: 204 STRISAKKNKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPK 350 ST SA+K KP+T KE KR+ + LE +K++ + A+ L N+ K Sbjct: 60 STSKSAEKEKPVTKKELKRREKQALLE---KKKKLLEIARANMLENMQK 105
>sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor Length = 678 Score = 30.4 bits (67), Expect = 1.3 Identities = 24/87 (27%), Positives = 39/87 (44%) Frame = +3 Query: 57 EHNELLEMLEKDETKRIIEDKKFTFKTVEEIEMKXXXXXXXXXXXXXXXSTRISAKKNKP 236 + E+L+ L+K E K+ K+ K E+IE K + K+ K Sbjct: 252 QQEEMLKTLDKKERKQ----KEKEMKEQEKIEKKKKKQEEK--------EKKKQEKERKK 299 Query: 237 LTSKERKRKLMKMNLEMNKQKERSKQK 317 KERK+K +M + +KER K++ Sbjct: 300 QEKKERKQKEKEMKKQKKIEKERKKKE 326
>sp|P31563|YCF1_OENBE Hypothetical protein ycf1 (ORF 1005) Length = 1005 Score = 30.4 bits (67), Expect = 1.3 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +3 Query: 213 ISAKKNKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPKLCNEIK 368 IS K + SK++K K + ++ ++K +SKQK + I NEIK Sbjct: 772 ISKSKQNEIKSKQKKVKSKQKKVKSKQKKVKSKQKKVKSKQNEIKSKQNEIK 823
Score = 29.6 bits (65), Expect = 2.2 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = +3 Query: 225 KNKPLTSKERKRKLMKMNLEMNKQKERSKQKGEAHELRNIPKLCNEIKR 371 K K + SK++K K + ++ + + +SKQK + I NE+KR Sbjct: 797 KQKKVKSKQKKVKSKQNEIKSKQNEIKSKQKKVKRKQNEIKSKLNEVKR 845
>sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6) Length = 229 Score = 30.4 bits (67), Expect = 1.3 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%) Frame = -3 Query: 230 IFLCADSC*FLHFNSFL-----LDIIFIRFHLDFFDCF 132 +FL C F FN+ L +D+ FIRF L F +CF Sbjct: 96 LFLFCFLCDFFLFNNLLVGDSFMDVFFIRFLLCFLECF 133
>sp|Q13061|TRDN_HUMAN Triadin Length = 729 Score = 30.0 bits (66), Expect = 1.7 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Frame = +3 Query: 51 KSEHNELLEMLEKDETKRIIEDKKFTFKTVEEIEMKXXXXXXXXXXXXXXXSTRISAKKN 230 K+ H E +E EK ETK + +++K KT E+ E K T+ K Sbjct: 183 KATHKEKIEKKEKPETKTVAKEQK-KAKTAEKSEEK----------------TKKEVKGG 225 Query: 231 KPLTSKERKRKLMKMNLEMNKQKERSKQKGEA---HELRNIPKLC 356 K K+ K+ ++ +K KE+ ++ A HE ++ C Sbjct: 226 KQEKVKQTAAKVKEVQKTPSKPKEKEDKEKAAVSKHEQKDQYAFC 270
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,759,455 Number of Sequences: 369166 Number of extensions: 407697 Number of successful extensions: 1932 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1793 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1910 length of database: 68,354,980 effective HSP length: 91 effective length of database: 51,544,095 effective search space used: 1700955135 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)