Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_F09
(217 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (He... 31 1.0
sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (He... 31 1.0
sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (He... 31 1.0
sp|Q9GSU4|HSP72_DROSI Major heat shock 70 kDa protein Ba (H... 29 2.9
sp|P02827|HSP70_XENLA Heat shock 70 kDa protein (HSP70) 28 5.0
>sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|Q71U34|HSP7C_SAGOE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
(Intracellular vitamin D binding protein 1)
Length = 646
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +3
Query: 3 CNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 134
CNPI+TK+YQ GPT+EEVD
Sbjct: 603 CNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|P63018|HSP7C_RAT Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +3
Query: 3 CNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 134
CNPI+TK+YQ GPT+EEVD
Sbjct: 603 CNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +3
Query: 3 CNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 134
CNPI+TK+YQ GPT+EEVD
Sbjct: 603 CNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|Q9GSU4|HSP72_DROSI Major heat shock 70 kDa protein Ba (Heat shock protein Hsp70Ba)
(HSP70-87C1)
Length = 643
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +3
Query: 3 CNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 134
C+PIMTKM+Q GPTVEEVD
Sbjct: 600 CSPIMTKMHQQGAGAGAAGGPGANCGQQAGGFGGYSGPTVEEVD 643
>sp|P02827|HSP70_XENLA Heat shock 70 kDa protein (HSP70)
Length = 647
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +3
Query: 3 CNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 134
C PI+TK+YQ GPT+EEVD
Sbjct: 604 CQPIITKLYQGGVPGGVPGGMPGSSCGAQARQGGNSGPTIEEVD 647
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,656,511
Number of Sequences: 369166
Number of extensions: 54630
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 68,354,980
effective HSP length: 43
effective length of database: 60,411,375
effective search space used: 1691518500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)