Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_F07
(892 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24752|THIL_HUMAN Acetyl-CoA acetyltransferase, mitochon... 243 5e-64
sp|Q04677|THIB_CANTR Acetyl-CoA acetyltransferase IB (Perox... 243 7e-64
sp|Q12598|THIA_CANTR Acetyl-CoA acetyltransferase IA (Perox... 241 3e-63
sp|Q8QZT1|THIL_MOUSE Acetyl-CoA acetyltransferase, mitochon... 240 3e-63
sp|P17764|THIL_RAT Acetyl-CoA acetyltransferase, mitochondr... 240 4e-63
sp|Q8HXY6|THIL_MACFA Acetyl-CoA acetyltransferase, mitochon... 235 1e-61
sp|P41338|THIL_YEAST Acetyl-CoA acetyltransferase (Acetoace... 230 5e-60
sp|P10551|THIL_SACBA Acetyl-CoA acetyltransferase (Acetoace... 226 9e-59
sp|Q8S4Y1|THIC1_ARATH Acetyl-CoA acetyltransferase, cytosol... 225 1e-58
sp|P44873|ATOB_HAEIN Acetyl-CoA acetyltransferase (Acetoace... 222 1e-57
>sp|P24752|THIL_HUMAN Acetyl-CoA acetyltransferase, mitochondrial precursor
(Acetoacetyl-CoA thiolase) (T2)
Length = 427
Score = 243 bits (620), Expect = 5e-64
Identities = 132/291 (45%), Positives = 178/291 (61%), Gaps = 2/291 (0%)
Frame = +2
Query: 14 MNEVFIITGCRTPIGSFKKGLSTFSAAELGAITIRETLNKISRKDLKIDEVLMGQVCQAN 193
+ EV I++ RTPIGSF LS A +LG+I I+ + K ++ E MG V Q
Sbjct: 39 LKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGG 98
Query: 194 CGQAPARQAALLANLPNEVSCTTINKVCASGMKSIIFGSQSIICGVNDIVIAGGQESMSN 373
GQAP RQA L A LP CTTINKVCASGMK+I+ SQS++CG D+++AGG ESMSN
Sbjct: 99 EGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSN 158
Query: 374 VPFYLPRKEPNYGGCTLIDGLLADGLTDSFNKCHMGTHVERVVEKFGIGRKDQDQYAQLS 553
VP+ + R YGG L D ++ DGLTD +NK HMG+ E +K I R +QD YA S
Sbjct: 159 VPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINS 218
Query: 554 YERAQNAIRNGVFYNEIVPVTVRQR-SGDVVISEDEECGRANFDRFASLKPAF-KSDGTI 727
Y R++ A G F NE++PVTV + DVV+ EDEE R +F + LK F K +GT+
Sbjct: 219 YTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTV 278
Query: 728 TXXXXXXXXXXXXCLLLASKDAIESNDLKPIAKVLGFSDAAMEPENFVIAP 880
T L+L + DA + ++ P+A+++ F+DAA+EP +F IAP
Sbjct: 279 TAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAP 329
>sp|Q04677|THIB_CANTR Acetyl-CoA acetyltransferase IB (Peroxisomal acetoacetyl-CoA
thiolase) (Thiolase IB)
Length = 403
Score = 243 bits (619), Expect = 7e-64
Identities = 130/296 (43%), Positives = 186/296 (62%), Gaps = 6/296 (2%)
Frame = +2
Query: 23 VFIITGCRTPIGSFKKGLSTFSAAELGAITIRETLNKISR-KDLKIDEVLMGQVCQANCG 199
V+I++ RTPIGSF+ LS+ + ++LGA ++ L K+ + K +DE++ G V QAN G
Sbjct: 6 VYIVSTARTPIGSFQGSLSSLTYSDLGAHAVKAALAKVPQIKPQDVDEIVFGGVLQANVG 65
Query: 200 QAPARQAALLANLPNEVSCTTINKVCASGMKSIIFGSQSIICGVNDIVIAGGQESMSNVP 379
QAPARQ AL A LP+ + +TINKVCASGMK++I G+Q+IICG +DIV+ GG ESMSN P
Sbjct: 66 QAPARQVALKAGLPDSIIASTINKVCASGMKAVIIGAQNIICGTSDIVVVGGAESMSNTP 125
Query: 380 FYLP--RKEPNYGGCTLIDGLLADGLTDSFNKCHMGTHVERVVEKFGIGRKDQDQYAQLS 553
+YLP R YG ++DG+ DGL D + + MG E+ + G R+DQD +A S
Sbjct: 126 YYLPSARSGARYGDAVMVDGVQKDGLLDVYEEKLMGVAAEKCAKDHGFSREDQDNFAINS 185
Query: 554 YERAQNAIRNGVFYNEIVPVTVRQRSG--DVVISEDEECGRANFDRFASLKPAF-KSDGT 724
Y++A A+ G F +EI PVT++ G D VI DEE G+ N DR S + F K +GT
Sbjct: 186 YKKAGKALSEGKFKSEIAPVTIKGFRGKPDTVIENDEEIGKFNEDRLKSARTVFQKENGT 245
Query: 725 ITXXXXXXXXXXXXCLLLASKDAIESNDLKPIAKVLGFSDAAMEPENFVIAPSESI 892
+T L+L S+ ++ LKP+AK+ G+ +AA P +F IAP+ ++
Sbjct: 246 VTAPNASKLNDGGAALVLVSEAKLKQLGLKPLAKISGWGEAARTPFDFTIAPALAV 301
>sp|Q12598|THIA_CANTR Acetyl-CoA acetyltransferase IA (Peroxisomal acetoacetyl-CoA
thiolase) (Thiolase IA)
Length = 403
Score = 241 bits (614), Expect = 3e-63
Identities = 129/296 (43%), Positives = 186/296 (62%), Gaps = 6/296 (2%)
Frame = +2
Query: 23 VFIITGCRTPIGSFKKGLSTFSAAELGAITIRETLNKISR-KDLKIDEVLMGQVCQANCG 199
V+I++ RTPIGSF+ LS+ + ++LGA ++ L K+ + K +DE++ G V QAN G
Sbjct: 6 VYIVSTARTPIGSFQGSLSSLTYSDLGAHAVKAALAKVPQIKPQDVDEIVFGGVLQANVG 65
Query: 200 QAPARQAALLANLPNEVSCTTINKVCASGMKSIIFGSQSIICGVNDIVIAGGQESMSNVP 379
QAPARQ AL A LP+ + +TINKVCASGMK++I G+Q+IICG +DIV+ GG ESMSN P
Sbjct: 66 QAPARQVALKAGLPDSIVASTINKVCASGMKAVIIGAQNIICGTSDIVVVGGAESMSNTP 125
Query: 380 FYLP--RKEPNYGGCTLIDGLLADGLTDSFNKCHMGTHVERVVEKFGIGRKDQDQYAQLS 553
+YLP R YG ++DG+ DGL D + + MG E+ + G R+DQD +A S
Sbjct: 126 YYLPSARSGARYGDAIMVDGVQKDGLLDVYEEKLMGVAAEKCAKDHGFSREDQDNFAINS 185
Query: 554 YERAQNAIRNGVFYNEIVPVTVRQRSG--DVVISEDEECGRANFDRFASLKPAF-KSDGT 724
Y++A A+ G F +EI PVT++ G D VI DEE G+ N +R S + F K +GT
Sbjct: 186 YKKAGKALSEGKFKSEIAPVTIKGFRGKPDTVIENDEEIGKFNEERLKSARTVFQKENGT 245
Query: 725 ITXXXXXXXXXXXXCLLLASKDAIESNDLKPIAKVLGFSDAAMEPENFVIAPSESI 892
+T L+L S+ ++ LKP+AK+ G+ +AA P +F IAP+ ++
Sbjct: 246 VTAPNASKLNDGGAALVLVSEAKLKQLGLKPLAKISGWGEAARTPFDFTIAPALAV 301
>sp|Q8QZT1|THIL_MOUSE Acetyl-CoA acetyltransferase, mitochondrial precursor
(Acetoacetyl-CoA thiolase)
Length = 424
Score = 240 bits (613), Expect = 3e-63
Identities = 128/295 (43%), Positives = 181/295 (61%), Gaps = 2/295 (0%)
Frame = +2
Query: 14 MNEVFIITGCRTPIGSFKKGLSTFSAAELGAITIRETLNKISRKDLKIDEVLMGQVCQAN 193
+NEV I++ RTPIGSF L++ A +LG I+ + K ++ EV MG V Q
Sbjct: 36 LNEVVIVSAIRTPIGSFLGSLASQPATKLGTAAIQGAIEKAGIPKEEVKEVYMGNVIQGG 95
Query: 194 CGQAPARQAALLANLPNEVSCTTINKVCASGMKSIIFGSQSIICGVNDIVIAGGQESMSN 373
GQAP RQA L A LP CTT+NKVCASGMK+I+ SQS++CG D+++AGG ESMSN
Sbjct: 96 EGQAPTRQATLGAGLPISTPCTTVNKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSN 155
Query: 374 VPFYLPRKEPNYGGCTLIDGLLADGLTDSFNKCHMGTHVERVVEKFGIGRKDQDQYAQLS 553
VP+ + R YGG L D ++ DGLTD +NK HMG E +K I R++QD YA S
Sbjct: 156 VPYVMSRGATPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKMNISRQEQDTYALSS 215
Query: 554 YERAQNAIRNGVFYNEIVPVTVRQR-SGDVVISEDEECGRANFDRFASLKPAF-KSDGTI 727
Y R++ A G F +EI P+T+ + DVV+ EDEE R +F + LK F K +GTI
Sbjct: 216 YTRSKEAWDAGKFASEITPITISVKGKPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTI 275
Query: 728 TXXXXXXXXXXXXCLLLASKDAIESNDLKPIAKVLGFSDAAMEPENFVIAPSESI 892
T L+L + +A + ++KP+A++ F+DAA++P +F +AP+ ++
Sbjct: 276 TAANASTLNDGAAALVLMTAEAAQRLNVKPLARIAAFADAAVDPIDFPLAPAYAV 330
>sp|P17764|THIL_RAT Acetyl-CoA acetyltransferase, mitochondrial precursor
(Acetoacetyl-CoA thiolase)
Length = 424
Score = 240 bits (612), Expect = 4e-63
Identities = 127/295 (43%), Positives = 182/295 (61%), Gaps = 2/295 (0%)
Frame = +2
Query: 14 MNEVFIITGCRTPIGSFKKGLSTFSAAELGAITIRETLNKISRKDLKIDEVLMGQVCQAN 193
+N+V I++ RTPIGSF L++ A +LG I I+ + K ++ EV MG V Q
Sbjct: 36 LNDVVIVSATRTPIGSFLGSLASQPATKLGTIAIQGAIEKAGIPKEEVKEVYMGNVIQGG 95
Query: 194 CGQAPARQAALLANLPNEVSCTTINKVCASGMKSIIFGSQSIICGVNDIVIAGGQESMSN 373
GQAP RQA L A LP CTT+NKVCASGMK+I+ SQS++CG D+++AGG ESMSN
Sbjct: 96 EGQAPTRQATLGAGLPIATPCTTVNKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSN 155
Query: 374 VPFYLPRKEPNYGGCTLIDGLLADGLTDSFNKCHMGTHVERVVEKFGIGRKDQDQYAQLS 553
VP+ + R YGG L D ++ DGLTD +NK HMG E +K I R++QD+YA S
Sbjct: 156 VPYVMSRGATPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLSISREEQDKYAIGS 215
Query: 554 YERAQNAIRNGVFYNEIVPVTVRQR-SGDVVISEDEECGRANFDRFASLKPAF-KSDGTI 727
Y R++ A G F NEI P+T+ + DVV+ EDEE R +F + LK F K +GT+
Sbjct: 216 YTRSKEAWDAGKFANEITPITISVKGKPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTV 275
Query: 728 TXXXXXXXXXXXXCLLLASKDAIESNDLKPIAKVLGFSDAAMEPENFVIAPSESI 892
T ++L + +A + +KP+A++ F+DAA++P +F +AP+ ++
Sbjct: 276 TAANASTLNDGAAAVVLMTAEAAQRLKVKPLARIAAFADAAVDPIDFPLAPAYAV 330
>sp|Q8HXY6|THIL_MACFA Acetyl-CoA acetyltransferase, mitochondrial precursor
(Acetoacetyl-CoA thiolase)
Length = 427
Score = 235 bits (600), Expect = 1e-61
Identities = 130/295 (44%), Positives = 178/295 (60%), Gaps = 2/295 (0%)
Frame = +2
Query: 14 MNEVFIITGCRTPIGSFKKGLSTFSAAELGAITIRETLNKISRKDLKIDEVLMGQVCQAN 193
+ EV I++ RTPIGSF LS +LG+I ++ + K ++ E MG V Q
Sbjct: 39 LKEVVIVSATRTPIGSFLGSLSLLPTTKLGSIAMQGAIEKAGIPKEEVKEAYMGNVLQGG 98
Query: 194 CGQAPARQAALLANLPNEVSCTTINKVCASGMKSIIFGSQSIICGVNDIVIAGGQESMSN 373
GQAPARQA L A LP TTINKVCASGMK+I+ SQS++CG D+++AGG ESMSN
Sbjct: 99 EGQAPARQAVLGAGLPISTPRTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSN 158
Query: 374 VPFYLPRKEPNYGGCTLIDGLLADGLTDSFNKCHMGTHVERVVEKFGIGRKDQDQYAQLS 553
VP+ + R YGG L D ++ DGLTD +NK HMG+ E +K I R +QD YA S
Sbjct: 159 VPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARDEQDAYAINS 218
Query: 554 YERAQNAIRNGVFYNEIVPVTVRQR-SGDVVISEDEECGRANFDRFASLKPAF-KSDGTI 727
Y R++ A G F NE++PVTV + DVV+ EDEE R +F + LK F K +GTI
Sbjct: 219 YTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTI 278
Query: 728 TXXXXXXXXXXXXCLLLASKDAIESNDLKPIAKVLGFSDAAMEPENFVIAPSESI 892
T L+L + A + ++ P+A+++ F+DAA+EP +F IAP ++
Sbjct: 279 TAANASTLNDGAAALVLMTAGAAKRLNVTPLARIVAFADAAVEPIDFPIAPVHAV 333
>sp|P41338|THIL_YEAST Acetyl-CoA acetyltransferase (Acetoacetyl-CoA thiolase)
Length = 398
Score = 230 bits (586), Expect = 5e-60
Identities = 122/297 (41%), Positives = 184/297 (61%), Gaps = 7/297 (2%)
Frame = +2
Query: 23 VFIITGCRTPIGSFKKGLSTFSAAELGAITIRETLNKISRKDLK--IDEVLMGQVCQANC 196
V+I++ RTPIGSF+ LS+ +A ELGA+ ++ L K+ D DE++ G V AN
Sbjct: 5 VYIVSTARTPIGSFQGSLSSKTAVELGAVALKGALAKVPELDASKDFDEIIFGNVLSANL 64
Query: 197 GQAPARQAALLANLPNEVSCTTINKVCASGMKSIIFGSQSIICGVNDIVIAGGQESMSNV 376
GQAPARQ AL A L N + +T+NKVCAS MK+II G+QSI CG D+V+AGG ESM+N
Sbjct: 65 GQAPARQVALAAGLSNHIVASTVNKVCASAMKAIILGAQSIKCGNADVVVAGGCESMTNA 124
Query: 377 PFYLP--RKEPNYGGCTLIDGLLADGLTDSFNKCHMGTHVERVVEKFGIGRKDQDQYAQL 550
P+Y+P R +G L+DG+ DGL D+++ MG H E+ + I R+ QD +A
Sbjct: 125 PYYMPAARAGAKFGQTVLVDGVERDGLNDAYDGLAMGVHAEKCARDWDITREQQDNFAIE 184
Query: 551 SYERAQNAIRNGVFYNEIVPVTVRQRSG--DVVISEDEECGRANFDRFASLKPAF-KSDG 721
SY+++Q + + G F NEIVPVT++ G D +++DEE R + ++ S + F K +G
Sbjct: 185 SYQKSQKSQKEGKFDNEIVPVTIKGFRGKPDTQVTKDEEPARLHVEKLRSARTVFQKENG 244
Query: 722 TITXXXXXXXXXXXXCLLLASKDAIESNDLKPIAKVLGFSDAAMEPENFVIAPSESI 892
T+T ++L S+ ++ +LKP+A + G+ +AA +P +F APS ++
Sbjct: 245 TVTAANASPINDGAAAVILVSEKVLKEKNLKPLAIIKGWGEAAHQPADFTWAPSLAV 301
>sp|P10551|THIL_SACBA Acetyl-CoA acetyltransferase (Acetoacetyl-CoA thiolase)
Length = 398
Score = 226 bits (575), Expect = 9e-59
Identities = 124/297 (41%), Positives = 180/297 (60%), Gaps = 7/297 (2%)
Frame = +2
Query: 23 VFIITGCRTPIGSFKKGLSTFSAAELGAITIRETLNKISRKDLK--IDEVLMGQVCQANC 196
V+I++ RTPIGSF+ LS+ +A ELGA ++ L K+ D DE++ G V AN
Sbjct: 5 VYIVSTARTPIGSFQGSLSSKTAVELGAAALKGALAKVPELDASKDFDEIIFGNVLSANL 64
Query: 197 GQAPARQAALLANLPNEVSCTTINKVCASGMKSIIFGSQSIICGVNDIVIAGGQESMSNV 376
GQAPARQ AL A L N + TT+NKVCAS MK+II G+QSI CG D+V+AGG ESM+N
Sbjct: 65 GQAPARQVALTAGLGNHIVATTVNKVCASAMKAIILGAQSIKCGNADVVVAGGCESMTNA 124
Query: 377 PFYLP--RKEPNYGGCTLIDGLLADGLTDSFNKCHMGTHVERVVEKFGIGRKDQDQYAQL 550
P+Y+P R +G LIDG+ DGL D+++ MG H E+ + I R QD +A
Sbjct: 125 PYYMPAARGGAKFGQTVLIDGVERDGLNDAYDGLAMGVHAEKCARDWDITRDQQDSFAIE 184
Query: 551 SYERAQNAIRNGVFYNEIVPVTVRQRSG--DVVISEDEECGRANFDRFASLKPAF-KSDG 721
SY+++Q + + G F NEIVPVT++ G D ++ DEE R + ++ S + F + +G
Sbjct: 185 SYQKSQQSQKEGKFDNEIVPVTIKGFRGKPDTQVTNDEEPARLHVEKLKSARTVFQRENG 244
Query: 722 TITXXXXXXXXXXXXCLLLASKDAIESNDLKPIAKVLGFSDAAMEPENFVIAPSESI 892
T+T ++L S+ ++ +LKP+A V G+ +AA P +F APS ++
Sbjct: 245 TVTAANASPINDGAAAIILVSERVLKEKNLKPLAIVKGWGEAAHLPADFTWAPSLAV 301
>sp|Q8S4Y1|THIC1_ARATH Acetyl-CoA acetyltransferase, cytosolic 1 (Cytosolic
acetoacetyl-CoA thiolase 1) (Thiolase 1)
Length = 403
Score = 225 bits (574), Expect = 1e-58
Identities = 129/296 (43%), Positives = 174/296 (58%), Gaps = 5/296 (1%)
Frame = +2
Query: 20 EVFIITGCRTPIGSFKKGLSTFSAAELGAITIRETLNKISRKDLKIDEVLMGQVCQANCG 199
+V I+ RTP+G F LS+ A +LG++ I L + + + EV+ G V AN G
Sbjct: 12 DVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEVVFGNVLSANLG 71
Query: 200 QAPARQAALLANLPNEVSCTTINKVCASGMKSIIFGSQSIICGVNDIVIAGGQESMSNVP 379
QAPARQAAL A +PN V CTT+NKVCASGMK+++ +QSI G+ND+V+AGG ESMSN P
Sbjct: 72 QAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQLGINDVVVAGGMESMSNTP 131
Query: 380 FYL--PRKEPNYGGCTLIDGLLADGLTDSFNKCHMGTHVERVVEKFGIGRKDQDQYAQLS 553
YL RK +G +L+DG+L DGL D +N C MG+ E EKF I R+ QD YA S
Sbjct: 132 KYLAEARKGSRFGHDSLVDGMLKDGLWDVYNDCGMGSCAELCAEKFQITREQQDDYAVQS 191
Query: 554 YERAQNAIRNGVFYNEIVPVTVRQRSG--DVVISEDEECGRANFDRFASLKPAFKSD-GT 724
+ER A G F EIVPV V G ++ +DE G+ + + L+P+FK + GT
Sbjct: 192 FERGIAAQEAGAFTWEIVPVEVSGGRGRPSTIVDKDEGLGKFDAAKLRKLRPSFKENGGT 251
Query: 725 ITXXXXXXXXXXXXCLLLASKDAIESNDLKPIAKVLGFSDAAMEPENFVIAPSESI 892
+T L+L S + L +AK+ G+ DAA EPE F AP+ +I
Sbjct: 252 VTAGNASSISDGAAALVLVSGEKALQLGLLVLAKIKGYGDAAQEPEFFTTAPALAI 307
>sp|P44873|ATOB_HAEIN Acetyl-CoA acetyltransferase (Acetoacetyl-CoA thiolase)
Length = 393
Score = 222 bits (566), Expect = 1e-57
Identities = 123/293 (41%), Positives = 170/293 (58%), Gaps = 4/293 (1%)
Frame = +2
Query: 14 MNEVFIITGCRTPIGSFKKGLSTFSAAELGAITIRETLNKISRKDLKIDEVLMGQVCQAN 193
M V I++ RTPIGSF LS+ SA +LGAI I+E + + + + ++EV+MG V QA
Sbjct: 1 MENVVIVSAVRTPIGSFNGALSSVSAVDLGAIVIQEAIKRANIESALVNEVIMGNVLQAG 60
Query: 194 CGQAPARQAALLANLPNEVSCTTINKVCASGMKSIIFGSQSIICGVNDIVIAGGQESMSN 373
GQ PARQAAL A + E+ TINKVC SG+KS+ G+QSII G DIV+ GG E+MS
Sbjct: 61 LGQNPARQAALKAGIEKEIPSLTINKVCGSGLKSVALGAQSIISGDADIVVVGGMENMSQ 120
Query: 374 VPFYLP---RKEPNYGGCTLIDGLLADGLTDSFNKCHMGTHVERVVEKFGIGRKDQDQYA 544
P+ L R+ G TL D ++ DGLT + N HMG E + E++GI R+ QD+ A
Sbjct: 121 APYLLDSKVRQGVKMGNLTLRDTMIEDGLTCASNHYHMGITAENIAEQYGISRQAQDELA 180
Query: 545 QLSYERAQNAIRNGVFYNEIVPVTVRQRSGDVVISEDE-ECGRANFDRFASLKPAFKSDG 721
S A A++ GVF EIVPV V+ R GD+++S DE + A LKPAFK +G
Sbjct: 181 LRSQTLASQAVQLGVFDKEIVPVMVKTRKGDIIVSRDEYPKADTTAEGLAKLKPAFKKEG 240
Query: 722 TITXXXXXXXXXXXXCLLLASKDAIESNDLKPIAKVLGFSDAAMEPENFVIAP 880
T+T L+L S+ + LK IAK+ ++ ++P + P
Sbjct: 241 TVTAGNASGINDGAAALILVSESKAHALGLKAIAKIRSYASGGVDPSVMGLGP 293
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,037,954
Number of Sequences: 369166
Number of extensions: 1866009
Number of successful extensions: 4645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4532
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)