Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_F06
(633 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8T0S6|HIPPO_DROME Serine/threonine-protein kinase hippo 44 3e-04
sp|Q13188|STK3_HUMAN Serine/threonine-protein kinase 3 (STE... 40 0.006
sp|Q9JI10|STK3_MOUSE Serine/threonine-protein kinase 3 (STE... 39 0.008
sp|Q13043|STK4_HUMAN Serine/threonine-protein kinase 4 (STE... 37 0.032
sp|Q92CH6|MUTS2_LISIN MutS2 protein 32 1.4
sp|Q8K9J9|RNE_BUCAP Ribonuclease E (RNase E) 30 3.9
sp|P52519|P100_HHV7J Large structural phosphoprotein homolo... 30 3.9
sp|Q9UTK5|ALM1_SCHPO Abnormal long morphology protein 1 (Sp8) 30 6.7
sp|P47459|P65H_MYCGE Proline-rich P65 protein homolog 30 6.7
sp|Q95ZG4|SPC98_DICDI Spindle pole body component 98 (Spc98... 30 6.7
>sp|Q8T0S6|HIPPO_DROME Serine/threonine-protein kinase hippo
Length = 669
Score = 43.9 bits (102), Expect = 3e-04
Identities = 23/69 (33%), Positives = 39/69 (56%)
Frame = +3
Query: 330 LNPNSFVNVEEIYRNLETKSYSELQQLLNRIDSDLQSELNNLEIRYLHKRQPILDAINEK 509
++ S VE + L+ ++ +L Q L ID +++ E+ L +Y KRQPI+DA+N K
Sbjct: 596 MHTQSHAYVEGEFEFLKFLTFDDLNQRLCNIDHEMELEIEQLNKKYNAKRQPIVDAMNAK 655
Query: 510 GKPIARVNS 536
K +N+
Sbjct: 656 RKRQQNINN 664
>sp|Q13188|STK3_HUMAN Serine/threonine-protein kinase 3 (STE20-like kinase MST2) (MST-2)
(Mammalian STE20-like protein kinase 2)
(Serine/threonine-protein kinase Krs-1)
Length = 491
Score = 39.7 bits (91), Expect = 0.006
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +3
Query: 375 LETKSYSELQQLLNRIDSDLQSELNNLEIRYLHKRQPILDAINEK 509
L+ S ELQ L +D ++ E+ L RY KRQPILDA++ K
Sbjct: 440 LKNLSLEELQMRLKALDPMMEREIEELRQRYTAKRQPILDAMDAK 484
>sp|Q9JI10|STK3_MOUSE Serine/threonine-protein kinase 3 (STE20-like kinase MST2) (MST-2)
(Mammalian STE20-like protein kinase 2)
Length = 497
Score = 39.3 bits (90), Expect = 0.008
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +3
Query: 375 LETKSYSELQQLLNRIDSDLQSELNNLEIRYLHKRQPILDAINEK 509
L+ S ELQ L +D ++ E+ L RY KRQPILDA++ K
Sbjct: 446 LKNLSLEELQMRLKALDPMMEREIEELHQRYSAKRQPILDAMDAK 490
>sp|Q13043|STK4_HUMAN Serine/threonine-protein kinase 4 (STE20-like kinase MST1) (MST-1)
(Mammalian STE20-like protein kinase 1)
(Serine/threonine-protein kinase Krs-2)
Length = 487
Score = 37.4 bits (85), Expect = 0.032
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +3
Query: 366 YRNLETKSYSELQQLLNRIDSDLQSELNNLEIRYLHKRQPILDAINEK 509
Y L++ + +LQ+ L +D ++ E+ + +Y KRQPILDAI K
Sbjct: 433 YEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAIEAK 480
>sp|Q92CH6|MUTS2_LISIN MutS2 protein
Length = 785
Score = 32.0 bits (71), Expect = 1.4
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 339 NSFVNVEEIYRNLETKSYSELQQLLNRIDS---DLQSELNNLEIRYLHKRQPILDAINEK 509
N ++ E RNL + Y E ++L D+ DLQ E+ N Y ++ +L+ NEK
Sbjct: 520 NDMISSLEEKRNLAEREYEEARELARGADALLKDLQKEITN----YYQQKDKLLEQANEK 575
Query: 510 GKPI 521
I
Sbjct: 576 AAGI 579
>sp|Q8K9J9|RNE_BUCAP Ribonuclease E (RNase E)
Length = 968
Score = 30.4 bits (67), Expect = 3.9
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +3
Query: 174 KTHLNSIFSNLFHNLDFYNAFL*CFQNNFYQKYFSLISIFLQEPAAQSPCGAL--NPNSF 347
K + NSI + LF+N + + F+ +N+F +K+ + + + Q+ L F
Sbjct: 553 KNYNNSIINALFNNKNLFFKFIVWIKNSFLKKHIFVKNESFKRNIFQNKKNILFAKKEEF 612
Query: 348 VNVEEIYR---NLETKSYSELQQLLNRI 422
++EEI++ + + ++ +QLLN++
Sbjct: 613 NSIEEIHKKDNQVSSIDNNKKKQLLNKV 640
>sp|P52519|P100_HHV7J Large structural phosphoprotein homolog (PP100)
Length = 755
Score = 30.4 bits (67), Expect = 3.9
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Frame = +3
Query: 243 CFQNNFYQKYFSLISIFLQE-PAAQSPCGALNPNSFVNVEEIYRNL------------ET 383
CF + F++ SL + ++E P S C NS NV+ +Y NL +
Sbjct: 17 CFLSRFFENISSLPVVDIRENPWILSQCIVKTGNSINNVKTLYNNLILWIYFHQTLCKKK 76
Query: 384 KSYSELQQLLNRIDSDLQSELNNLEIRYLHKRQPILD 494
Y E+ Q + ++ L+ YL +RQ I D
Sbjct: 77 PDYEEVWQEILKVQKILKD--------YLEQRQMITD 105
>sp|Q9UTK5|ALM1_SCHPO Abnormal long morphology protein 1 (Sp8)
Length = 1727
Score = 29.6 bits (65), Expect = 6.7
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 330 LNPNSFVNVEEIYRNLETKSYSELQQLLNRIDSDLQSELNNLEIRY 467
L F +E + + SYSE + LL SDLQS+ +LE +Y
Sbjct: 890 LEKQRFSTLEAKFTQQKNTSYSEREALLESSLSDLQSKHTSLESQY 935
>sp|P47459|P65H_MYCGE Proline-rich P65 protein homolog
Length = 372
Score = 29.6 bits (65), Expect = 6.7
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 351 NVEEIYRNLETKSYSELQQLLNRIDSD-LQSELNNLEIRYLHKRQPILDAINEKGK 515
N+E I NLE K ++ +QL D+ L ++N LEIR + K ++++E K
Sbjct: 243 NLEAIRHNLEQKIQNQSKQLRTNFDTQKLDDKINELEIR-MQKLTRNFESLSELSK 297
>sp|Q95ZG4|SPC98_DICDI Spindle pole body component 98 (Spc98) (DdSpc98)
Length = 812
Score = 29.6 bits (65), Expect = 6.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 149 KAFNNFINHIRKLTRIYIQNNYSISSE*IKQKV 51
K FN+F NH+ L + Y + Y SE +K KV
Sbjct: 755 KEFNSFRNHLNNLYQEYTTSFYKFQSEILKVKV 787
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,258,280
Number of Sequences: 369166
Number of extensions: 1234038
Number of successful extensions: 3444
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3442
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)