Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_F05
(906 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50440|GATM_HUMAN Glycine amidinotransferase, mitochondr... 217 4e-56
sp|P50441|GATM_PIG Glycine amidinotransferase (L-arginine:g... 215 1e-55
sp|Q9D964|GATM_MOUSE Glycine amidinotransferase, mitochondr... 213 6e-55
sp|P50442|GATM_RAT Glycine amidinotransferase, mitochondria... 211 2e-54
sp|P08078|STRB1_STRGR Inosamine-phosphate amidinotransferas... 104 4e-22
sp|P29780|STRB2_STRGR Putative inosamine-phosphate amidinot... 98 4e-20
sp|Q54258|STRB1_STRGA Inosamine-phosphate amidinotransferas... 97 5e-20
sp|Q54264|STRB2_STRGA Putative inosamine-phosphate amidinot... 57 7e-08
sp|Q5HCR2|ARCA_STAAC Arginine deiminase (ADI) (Arginine dih... 33 1.4
sp|Q6GDG7|ARCA_STAAR Arginine deiminase (ADI) (Arginine dih... 33 1.4
>sp|P50440|GATM_HUMAN Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 217 bits (552), Expect = 4e-56
Identities = 130/291 (44%), Positives = 173/291 (59%), Gaps = 8/291 (2%)
Frame = +2
Query: 56 SKFNRILTLNCVYKTSVSTNQIVLSNITHRNCCT---KTKVENKKNSPVWSWNEWDPLEE 226
S+ R LT V +T ST S+ RN C K K+ PV S+NEWDPLEE
Sbjct: 22 SRLGRTLT-GWVQRTFQSTQAATASS---RNSCAADDKATEPLPKDCPVSSYNEWDPLEE 77
Query: 227 VIXXXXXXXXXXXXXXETAACFGERLTENFMKKYGGQYWSDIMPKEVWQNVLKEHQEFVN 406
VI E A E+ F +K GG Y+ PK+ + + E +E N
Sbjct: 78 VIVGRAENACVPPFTIEVKANTYEKYWP-FYQKQGGHYF----PKDHLKKAVAEIEEMCN 132
Query: 407 ILKGEGVKVVHPEPMDMKKEYETPYFKSVGLDCAFPRDIILVVGDEIMETTMTWRSRFWE 586
ILK EGV V P+P+D +Y+TP F+S GL A PRDI++VVG+EI+E M WRSRF+E
Sbjct: 133 ILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFE 192
Query: 587 YLCYRPLMLDYWRRGANFQSAPKPVCSEQSFKKNFDISG----NKFDELG-YVTTEFEPM 751
Y YR ++ DY+ RGA + +APKP +++ + +++ I +K G +VTTEFEP
Sbjct: 193 YRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPC 252
Query: 752 FDAADFMRAGRDIFVQQSHVTNASGIEWMRQHLAEKGIRLHLLNFHDPYAM 904
FDAADF+RAGRDIF Q+S VTN GIEWMR+HLA R+H+++F DP M
Sbjct: 253 FDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLA-PDYRVHIISFKDPNPM 302
>sp|P50441|GATM_PIG Glycine amidinotransferase (L-arginine:glycine amidinotransferase)
(Transamidinase) (AT)
Length = 386
Score = 215 bits (548), Expect = 1e-55
Identities = 118/247 (47%), Positives = 159/247 (64%), Gaps = 5/247 (2%)
Frame = +2
Query: 179 KNSPVWSWNEWDPLEEVIXXXXXXXXXXXXXXETAACFGERLTENFMKKYGGQYWSDIMP 358
K+ PV S+NEWDPLEEVI E A E+ F +KYGG Y+ P
Sbjct: 25 KDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWP-FYQKYGGHYF----P 79
Query: 359 KEVWQNVLKEHQEFVNILKGEGVKVVHPEPMDMKKEYETPYFKSVGLDCAFPRDIILVVG 538
K+ + + E +E NILK EGV V P+P+D +Y+TP F+S GL A PRDI++VVG
Sbjct: 80 KDHLKKAVAEIEEMCNILKMEGVTVRRPDPIDWSVKYKTPDFESTGLYGAMPRDILIVVG 139
Query: 539 DEIMETTMTWRSRFWEYLCYRPLMLDYWRRGANFQSAPKPVCSEQSFKKNFDI----SGN 706
+EI+E M WR+RF+EY YR ++ DY+RRGA + +APKP +++ + +++ I +
Sbjct: 140 NEIIEAPMAWRARFFEYRAYRSIIKDYFRRGAKWTTAPKPTMADELYDQDYPIYSVEDRH 199
Query: 707 KFDELG-YVTTEFEPMFDAADFMRAGRDIFVQQSHVTNASGIEWMRQHLAEKGIRLHLLN 883
K G +VTTEFEP FDAADF+RAGRDIF Q+S VTN GIEWMR+HLA R+H+++
Sbjct: 200 KLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYMGIEWMRKHLA-PDYRVHIIS 258
Query: 884 FHDPYAM 904
F DP M
Sbjct: 259 FKDPNPM 265
>sp|Q9D964|GATM_MOUSE Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 213 bits (542), Expect = 6e-55
Identities = 124/279 (44%), Positives = 168/279 (60%), Gaps = 7/279 (2%)
Frame = +2
Query: 89 VYKTSVSTNQIVLSNITHRNCCTKTKVENK--KNSPVWSWNEWDPLEEVIXXXXXXXXXX 262
V +T ST S+ +C + K + K+ PV S+NEWDPLEEVI
Sbjct: 32 VQRTFQSTQAATASS--RNSCAAEDKATHPLPKDCPVSSYNEWDPLEEVIVGRAENACVP 89
Query: 263 XXXXETAACFGERLTENFMKKYGGQYWSDIMPKEVWQNVLKEHQEFVNILKGEGVKVVHP 442
E A E+ F +K GG Y+ PK+ + + E +E NIL EGV V P
Sbjct: 90 PFTVEVKANTYEKYWP-FYQKNGGLYF----PKDHLKKAVAEVEEMCNILSMEGVTVRRP 144
Query: 443 EPMDMKKEYETPYFKSVGLDCAFPRDIILVVGDEIMETTMTWRSRFWEYLCYRPLMLDYW 622
+P+D +Y+TP F+S GL A PRDI++VVG+EI+E M WRSRF+EY YR ++ DY+
Sbjct: 145 DPIDWSLKYKTPDFESTGLYSAMPRDILMVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYF 204
Query: 623 RRGANFQSAPKPVCSEQSFKKNFDISG----NKFDELG-YVTTEFEPMFDAADFMRAGRD 787
RGA + +APKP +++ + +N+ I +K G +VTTEFEP FDAADF+RAGRD
Sbjct: 205 HRGAKWTTAPKPTMADELYDQNYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRD 264
Query: 788 IFVQQSHVTNASGIEWMRQHLAEKGIRLHLLNFHDPYAM 904
IF Q+S VTN GIEWMR+HLA R+H+++F DP M
Sbjct: 265 IFAQRSQVTNYLGIEWMRRHLA-PDYRVHIISFKDPNPM 302
>sp|P50442|GATM_RAT Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 211 bits (538), Expect = 2e-54
Identities = 123/279 (44%), Positives = 168/279 (60%), Gaps = 7/279 (2%)
Frame = +2
Query: 89 VYKTSVSTNQIVLSNITHRNCCTKTKVENK--KNSPVWSWNEWDPLEEVIXXXXXXXXXX 262
V +T ST S+ +C + K + K+ PV S+NEWDPLEEVI
Sbjct: 32 VQRTFQSTQAATASS--QNSCAAEDKATHPLPKDCPVSSYNEWDPLEEVIVGRAENACVP 89
Query: 263 XXXXETAACFGERLTENFMKKYGGQYWSDIMPKEVWQNVLKEHQEFVNILKGEGVKVVHP 442
E A E+ F +K GG Y+ PK+ + + E +E NIL EGV V P
Sbjct: 90 PFTVEVKANTYEKYWP-FYQKNGGLYF----PKDHLKKAVAEVEEMCNILSMEGVTVKRP 144
Query: 443 EPMDMKKEYETPYFKSVGLDCAFPRDIILVVGDEIMETTMTWRSRFWEYLCYRPLMLDYW 622
+P+D +Y+TP F+S GL A PRDI++VVG+EI+E M WRSRF+EY YR ++ DY+
Sbjct: 145 DPIDWSLKYKTPDFESTGLYSAMPRDILMVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYF 204
Query: 623 RRGANFQSAPKPVCSEQSFKKNFDISG----NKFDELG-YVTTEFEPMFDAADFMRAGRD 787
RGA + +APKP +++ + +++ I +K G +VTTEFEP FDAADF+RAGRD
Sbjct: 205 HRGAKWTTAPKPTMADELYDQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRD 264
Query: 788 IFVQQSHVTNASGIEWMRQHLAEKGIRLHLLNFHDPYAM 904
IF Q+S VTN GIEWMR+HLA R+H+++F DP M
Sbjct: 265 IFAQRSQVTNYLGIEWMRRHLA-PDYRVHIISFKDPNPM 302
>sp|P08078|STRB1_STRGR Inosamine-phosphate amidinotransferase I (Aminocyclitol
amidinotransferase) (ADT)
Length = 347
Score = 104 bits (259), Expect = 4e-22
Identities = 76/228 (33%), Positives = 110/228 (48%), Gaps = 10/228 (4%)
Frame = +2
Query: 203 NEWDPLEEVIXXXXXXXXXXXXXXETAACFGERLTEN----FMKKYGGQYWS-DIMPKEV 367
NEWDPLEEVI G R+ F +Y G Y S + +P
Sbjct: 8 NEWDPLEEVI---------------VGTAVGARVPTADRSVFAVEYAGDYESQEQIPSGA 52
Query: 368 WQN-VLKEHQEFVNILKGE----GVKVVHPEPMDMKKEYETPYFKSVGLDCAFPRDIILV 532
+ + VLKE +E +++L E GV V P P D +TP +++ G PRD +L
Sbjct: 53 YPDRVLKETEEELHVLAAELTKLGVTVRRPGPRDHSALIKTPDWETDGFHDYCPRDGLLS 112
Query: 533 VGDEIMETTMTWRSRFWEYLCYRPLMLDYWRRGANFQSAPKPVCSEQSFKKNFDISGNKF 712
VG I+ET M RSRF E L Y+ L+L+Y+ G+ + SAPKP ++ S+
Sbjct: 113 VGQTIIETPMALRSRFLESLAYKDLLLEYFASGSRWLSAPKPRLTDDSYAPQAPAGERLT 172
Query: 713 DELGYVTTEFEPMFDAADFMRAGRDIFVQQSHVTNASGIEWMRQHLAE 856
DE EP+FDAA+ +R G D+ S N G +W++ + +
Sbjct: 173 DE--------EPVFDAANVLRFGTDLLYLVSDSGNELGAKWLQSAVGD 212
>sp|P29780|STRB2_STRGR Putative inosamine-phosphate amidinotransferase II (Aminocyclitol
amidinotransferase) (ADT)
Length = 349
Score = 97.8 bits (242), Expect = 4e-20
Identities = 70/223 (31%), Positives = 101/223 (45%), Gaps = 7/223 (3%)
Frame = +2
Query: 203 NEWDPLEEVIXXXXXXXXXXXXXXETAACFG---ERLTENFMKKYGGQYWSDI----MPK 361
NEWDPLEEV+ C G L + + G W ++ P
Sbjct: 8 NEWDPLEEVVVGTARRP-----------CAGPDRSLLAVEYAEYAGPGRWQEVPTGPYPD 56
Query: 362 EVWQNVLKEHQEFVNILKGEGVKVVHPEPMDMKKEYETPYFKSVGLDCAFPRDIILVVGD 541
+ E +E L+G GV V P D TP ++S G PRD +LVVGD
Sbjct: 57 RALKETEDELEELCEELRGLGVTVRRPGARDSAAPVRTPDWESDGYGDLCPRDGLLVVGD 116
Query: 542 EIMETTMTWRSRFWEYLCYRPLMLDYWRRGANFQSAPKPVCSEQSFKKNFDISGNKFDEL 721
++E M R+RF E L Y+ L+++Y G+ + SAPKP +E + + SG + +L
Sbjct: 117 TVIEAPMALRARFLESLAYKELLVEYLAAGSRWISAPKPRLAEGMYSPS-GPSGERLRDL 175
Query: 722 GYVTTEFEPMFDAADFMRAGRDIFVQQSHVTNASGIEWMRQHL 850
EP+FDAA+ +R G D+ S N G W++ L
Sbjct: 176 -------EPVFDAANVLRLGTDLLYLVSDSGNELGARWLQSAL 211
>sp|Q54258|STRB1_STRGA Inosamine-phosphate amidinotransferase I (Aminocyclitol
amidinotransferase) (ADT)
Length = 348
Score = 97.4 bits (241), Expect = 5e-20
Identities = 71/226 (31%), Positives = 109/226 (48%), Gaps = 10/226 (4%)
Frame = +2
Query: 203 NEWDPLEEVIXXXXXXXXXXXXXXETAACFGERLTEN----FMKKYGGQYWS-DIMPKEV 367
NEWDPLEE+I G R+ F +Y +Y S D +P
Sbjct: 8 NEWDPLEEII---------------VGTAVGARVPRADRSVFAVEYADEYDSQDQVPAGP 52
Query: 368 WQN-VLKEHQEFVNILKGE----GVKVVHPEPMDMKKEYETPYFKSVGLDCAFPRDIILV 532
+ + VLKE +E +++L E GV V P D TP +++ G PRD +L
Sbjct: 53 YPDRVLKETEEELHVLSEELTKLGVTVRRPGQRDNSALVATPDWQTDGFHDYCPRDGLLA 112
Query: 533 VGDEIMETTMTWRSRFWEYLCYRPLMLDYWRRGANFQSAPKPVCSEQSFKKNFDISGNKF 712
VG ++E+ M R+RF E L Y+ ++L+Y+ GA + SAPKP +++ ++
Sbjct: 113 VGQTVIESPMALRARFLESLAYKDILLEYFASGARWLSAPKPRLADEMYEPT-------- 164
Query: 713 DELGYVTTEFEPMFDAADFMRAGRDIFVQQSHVTNASGIEWMRQHL 850
G T+ EP+FDAA+ +R G D+ S N G +W++ L
Sbjct: 165 APAGQRLTDLEPVFDAANVLRFGTDLLYLVSDSGNELGAKWLQSAL 210
>sp|Q54264|STRB2_STRGA Putative inosamine-phosphate amidinotransferase II (Aminocyclitol
amidinotransferase) (ADT)
Length = 319
Score = 57.0 bits (136), Expect = 7e-08
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 3/153 (1%)
Frame = +2
Query: 410 LKGEGVKVVHPEPMDMKKEYETPYFKSVGLDCAF---PRDIILVVGDEIMETTMTWRSRF 580
L+G GV V P D P G D A PRD +L VG+ +++T
Sbjct: 43 LRGLGVTVRRLPPQDPASPPAPP---DRGADTALAYRPRDGLLTVGETVIQTPAVPGLPS 99
Query: 581 WEYLCYRPLMLDYWRRGANFQSAPKPVCSEQSFKKNFDISGNKFDELGYVTTEFEPMFDA 760
+ R L+++Y+ G+ + SAP PV + D+ + G E EP+FDA
Sbjct: 100 LQSPACRMLLMEYFTSGSRWISAPPPVLT--------DVMYDPTAPAGERLRELEPVFDA 151
Query: 761 ADFMRAGRDIFVQQSHVTNASGIEWMRQHLAEK 859
+R G D+ S NA G W++ L E+
Sbjct: 152 DTVLRIGTDLLYLVSDSGNALGARWLQAALGER 184
>sp|Q5HCR2|ARCA_STAAC Arginine deiminase (ADI) (Arginine dihydrolase) (AD)
sp|Q8NUK7|ARCA_STAAW Arginine deiminase (ADI) (Arginine dihydrolase) (AD)
sp|Q6G639|ARCA_STAAS Arginine deiminase (ADI) (Arginine dihydrolase) (AD)
Length = 411
Score = 32.7 bits (73), Expect = 1.4
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 308 ENFMKKY-GGQYWSDIMPKEVWQNVLKEHQEFVNILKGEGVKVVHPEPMDMKKEYETPYF 484
EN + Y G + DI EV Q KEH F +L+ EGV+V++ E + + E P
Sbjct: 28 ENLVPDYLDGLLFDDIPYLEVAQ---KEHDHFAQVLREEGVEVLYLEKL-AAESIENPQV 83
Query: 485 KSVGLDCAFPRDIILVVGDE 544
+S +D ++G E
Sbjct: 84 RSEFIDDVLAESKKTILGHE 103
>sp|Q6GDG7|ARCA_STAAR Arginine deiminase (ADI) (Arginine dihydrolase) (AD)
Length = 411
Score = 32.7 bits (73), Expect = 1.4
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 308 ENFMKKY-GGQYWSDIMPKEVWQNVLKEHQEFVNILKGEGVKVVHPEPMDMKKEYETPYF 484
EN + Y G + DI EV Q KEH F +L+ EGV+V++ E + + E P
Sbjct: 28 ENLVPDYLDGLLFDDIPYLEVAQ---KEHDHFAQVLREEGVEVLYLEKL-AAESIENPQV 83
Query: 485 KSVGLDCAFPRDIILVVGDE 544
+S +D ++G E
Sbjct: 84 RSEFIDDVLAESKKTILGHE 103
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,243,583
Number of Sequences: 369166
Number of extensions: 2329851
Number of successful extensions: 5950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5931
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)