Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_E23
(693 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57088|TMM33_HUMAN Transmembrane protein 33 (DB83 protein) 114 2e-25
sp|Q9Z142|TMM33_RAT Transmembrane protein 33 (DB83 protein) 114 2e-25
sp|Q9CR67|TMM33_MOUSE Transmembrane protein 33 (DB83 protein) 114 3e-25
sp|Q9XWV0|TMM33_CAEEL Hypothetical UPF0121 protein Y37D8A.1... 96 7e-20
sp|Q9V447|KRH2_DROME Kr-h2 protein 76 1e-13
sp|P83056|KNL1_BOMVA Kininogen-1 precursor (BVK-1) [Contain... 31 3.5
sp|Q9V931|OB57C_DROME General odorant-binding protein 57c p... 30 4.6
sp|Q4L3Q4|PROP_STAHJ Putative proline/betaine transporter 30 4.6
sp|O54699|S29A2_RAT Equilibrative nucleoside transporter 2 ... 30 6.1
>sp|P57088|TMM33_HUMAN Transmembrane protein 33 (DB83 protein)
Length = 247
Score = 114 bits (285), Expect = 2e-25
Identities = 53/127 (41%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Frame = +1
Query: 85 FLSASPVTISIIPILLFALLHVSSFITKLIQTCNV-SLGFFKKLIDKVTSNQVFLLQVIA 261
F+++ PVT+SI P+LLF+LLH +++ K++ SL + ++DK+++NQ +L+ IA
Sbjct: 102 FVNSYPVTMSIFPVLLFSLLHAATYTKKVLDARGSNSLPLLRSVLDKLSANQQNILKFIA 161
Query: 262 INEVMLMPIIIITVLTGGGNIFLPFVYYRFIFLRYSSIRNPYSKMVFLHLRMSVEQLAAN 441
NE+ LMP + + +G G++ PF+YYRF+ LRYSS RNPY + +F LR+ VE +
Sbjct: 162 CNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRTLFNELRIVVEHIIMK 221
Query: 442 PKCPAVI 462
P CP +
Sbjct: 222 PACPLFV 228
Score = 30.8 bits (68), Expect = 3.5
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +3
Query: 18 NRATLSLLLSKDACHYLIFSVMFFVSF 98
+RA L+ L +D+CHYL++S++F S+
Sbjct: 80 SRAFLAQALLEDSCHYLLYSLIFVNSY 106
>sp|Q9Z142|TMM33_RAT Transmembrane protein 33 (DB83 protein)
Length = 247
Score = 114 bits (285), Expect = 2e-25
Identities = 53/127 (41%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Frame = +1
Query: 85 FLSASPVTISIIPILLFALLHVSSFITKLIQTCNV-SLGFFKKLIDKVTSNQVFLLQVIA 261
F+++ PVT+SI P+LLF+LLH +++ K++ SL + ++DK+++NQ +L+ IA
Sbjct: 102 FVNSYPVTMSIFPVLLFSLLHAATYTKKVLDAKGSNSLPLLRSVLDKLSTNQQNILKFIA 161
Query: 262 INEVMLMPIIIITVLTGGGNIFLPFVYYRFIFLRYSSIRNPYSKMVFLHLRMSVEQLAAN 441
NE+ LMP + + +G G++ PF+YYRF+ LRYSS RNPY + +F LR+ VE +
Sbjct: 162 CNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRNLFNELRIVVEHIIMK 221
Query: 442 PKCPAVI 462
P CP +
Sbjct: 222 PSCPLFV 228
Score = 30.8 bits (68), Expect = 3.5
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +3
Query: 18 NRATLSLLLSKDACHYLIFSVMFFVSF 98
+RA L+ L +D+CHYL++S++F S+
Sbjct: 80 SRAFLAQALLEDSCHYLLYSLIFVNSY 106
>sp|Q9CR67|TMM33_MOUSE Transmembrane protein 33 (DB83 protein)
Length = 247
Score = 114 bits (284), Expect = 3e-25
Identities = 53/127 (41%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = +1
Query: 85 FLSASPVTISIIPILLFALLHVSSFITKLIQTCNV-SLGFFKKLIDKVTSNQVFLLQVIA 261
F+++ PVT+SI P+LLF+LLH +++ K++ SL + +DK+++NQ +L+ IA
Sbjct: 102 FVNSYPVTMSIFPVLLFSLLHAATYTKKVLDAKGSNSLPLLRSFLDKLSTNQQNILKFIA 161
Query: 262 INEVMLMPIIIITVLTGGGNIFLPFVYYRFIFLRYSSIRNPYSKMVFLHLRMSVEQLAAN 441
NE+ LMP + + +G G++ PF+YYRF+ LRYSS RNPY + +F LR+ VE +
Sbjct: 162 CNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRNLFNELRIVVEHIIMK 221
Query: 442 PKCPAVI 462
P CP +
Sbjct: 222 PSCPLFV 228
Score = 30.8 bits (68), Expect = 3.5
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +3
Query: 18 NRATLSLLLSKDACHYLIFSVMFFVSF 98
+RA L+ L +D+CHYL++S++F S+
Sbjct: 80 SRAFLAQALLEDSCHYLLYSLIFVNSY 106
>sp|Q9XWV0|TMM33_CAEEL Hypothetical UPF0121 protein Y37D8A.17 in chromosome I
Length = 271
Score = 96.3 bits (238), Expect = 7e-20
Identities = 43/126 (34%), Positives = 77/126 (61%)
Frame = +1
Query: 85 FLSASPVTISIIPILLFALLHVSSFITKLIQTCNVSLGFFKKLIDKVTSNQVFLLQVIAI 264
FL A+PV+++ +P+ ++A LH +F+TK+++ + KL L +IA
Sbjct: 127 FLMAAPVSMAALPVTIYAALHACTFMTKILRETGHTSSIIPKLEQFTAHQTQNALGIIAC 186
Query: 265 NEVMLMPIIIITVLTGGGNIFLPFVYYRFIFLRYSSIRNPYSKMVFLHLRMSVEQLAANP 444
+E+ L+P+++ + +G G++ LPF YYRF+ LRY+S RNP ++ F +R S++ +A +
Sbjct: 187 SEIFLVPLLVSLIFSGKGSLLLPFAYYRFLSLRYASRRNPSTRQAFAQMRGSLQNVAMSS 246
Query: 445 KCPAVI 462
CP I
Sbjct: 247 SCPRPI 252
>sp|Q9V447|KRH2_DROME Kr-h2 protein
Length = 276
Score = 75.9 bits (185), Expect = 1e-13
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Frame = +1
Query: 85 FLSASPVTISIIPILLFALLHVSSFITKLIQTCNVSLGFFKKLIDKVTSNQVF-LLQVIA 261
F + P + +IP+LL+++LH SS+ KL+ + + + I + Q +L+ A
Sbjct: 127 FFNIRPSLLVLIPVLLYSVLHASSYSLKLLDLIGQNSWWGARFIISIVEFQAANILKATA 186
Query: 262 INEVMLMPIIIITVLTGGGNIFLPFVYYRFIFLRYSSIRNPYSKMVFLHLRMSVEQLAA 438
E+ +MP I+ + P +YY ++ +RYSS RNPY + F LR++ E LAA
Sbjct: 187 FCEIFIMPYAIVLAFMNHAGLMTPVIYYHYLVMRYSSRRNPYPRNAFAELRITFEALAA 245
Score = 32.7 bits (73), Expect = 0.93
Identities = 11/25 (44%), Positives = 21/25 (84%)
Frame = +3
Query: 15 FNRATLSLLLSKDACHYLIFSVMFF 89
F+R L+ L ++D+CHY+++S++FF
Sbjct: 104 FSREFLARLFAEDSCHYMMYSLIFF 128
>sp|P83056|KNL1_BOMVA Kininogen-1 precursor (BVK-1) [Contains: [Ala3,Thr6]bradykinin;
Kininogen-1 associated peptide]
Length = 97
Score = 30.8 bits (68), Expect = 3.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 652 KNKQKQNAISTCKNCNDCRPHPLC 581
+ K+ NAI CK+CN C+P LC
Sbjct: 72 ETKRIYNAIWPCKHCNKCKPGLLC 95
>sp|Q9V931|OB57C_DROME General odorant-binding protein 57c precursor
Length = 149
Score = 30.4 bits (67), Expect = 4.6
Identities = 12/45 (26%), Positives = 30/45 (66%)
Frame = +1
Query: 103 VTISIIPILLFALLHVSSFITKLIQTCNVSLGFFKKLIDKVTSNQ 237
+T+S++ I +LL +++++ + + N+S F++LID+ +S +
Sbjct: 10 LTVSVVSIQSLSLLEETNYVSDCLASNNISQAEFQELIDRNSSEE 54
>sp|Q4L3Q4|PROP_STAHJ Putative proline/betaine transporter
Length = 468
Score = 30.4 bits (67), Expect = 4.6
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 9/140 (6%)
Frame = +1
Query: 22 EQLLVCFCQRTLV-IT*YFLSCFLSASPVTISIIPILLFALLHVSSFITKLIQTCNVSLG 198
+ +LVCF +T Y ++ +L P L ++ + T ++ TC +++
Sbjct: 244 KDILVCFVAVVFFNVTNYTVTAYL----------PTYLGQIVKIDETTTSVLITCVMAVM 293
Query: 199 -----FFKKLIDKVTSNQVFLLQVIAINEVMLMPIIIITVLTGGGNIFL---PFVYYRFI 354
FF KL DK+ +VFL I + L+ I+ ++L F+ F+ F+
Sbjct: 294 IPLALFFGKLADKIGEKKVFL---IGTGGLTLLSIVAFSLLNTKSLPFIILGVFILGFFL 350
Query: 355 FLRYSSIRNPYSKMVFLHLR 414
+++ M F H+R
Sbjct: 351 STYEATMPGSLPTMFFTHIR 370
>sp|O54699|S29A2_RAT Equilibrative nucleoside transporter 2 (Equilibrative
nitrobenzylmercaptopurine riboside-insensitive
nucleoside transporter) (Equilibrative NBMPR-insensitive
nucleoside transporter) (Nucleoside transporter,
ei-type) (Solute carrier family 29 member 2)
Length = 456
Score = 30.0 bits (66), Expect = 6.1
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +3
Query: 21 RATLSLLLSKDACHYLIFSVMFFVSFTSYNFYYSNFTICSSPRQQFYYE 167
RA L ++ +DA +++ F ++F +S N Y+ + T+C +PRQ +E
Sbjct: 383 RARLPIIFWQDA-YFITFMLLFAIS----NGYFVSLTMCLAPRQVLPHE 426
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,901,776
Number of Sequences: 369166
Number of extensions: 1391532
Number of successful extensions: 3644
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3638
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)