Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_E03
(533 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00467|NIFD_CLOPA Nitrogenase molybdenum-iron protein al... 32 1.3
sp|Q04704|V6B_CVCAE Protein 6B 31 1.7
sp|P53616|SUN4_YEAST Septation protein SUN4 precursor (Solu... 30 2.8
sp|Q37370|COX1_ACACA Cytochrome c oxidase subunit 1+2 (Cyto... 30 4.8
sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial g... 29 6.3
sp|P82984|OR65C_DROME Putative odorant receptor 65c 29 6.3
sp|Q9UPU5|UBP24_HUMAN Ubiquitin carboxyl-terminal hydrolase... 29 6.3
sp|Q72CF4|RPOA_DESVH DNA-directed RNA polymerase alpha chai... 29 8.2
>sp|P00467|NIFD_CLOPA Nitrogenase molybdenum-iron protein alpha chain (Nitrogenase
component I) (Dinitrogenase)
Length = 534
Score = 31.6 bits (70), Expect = 1.3
Identities = 24/95 (25%), Positives = 40/95 (42%)
Frame = +3
Query: 135 SRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIQNSTKLVWKWTDGKNLPENAIMGG 314
+R V II CAY G KGV + + + + W K+ PEN G
Sbjct: 41 TRTVPGIITARGCAYAGCKGVVMGPIKDMVHITHGPIGCSFYTWGGRRFKSKPENGT--G 98
Query: 315 HDGDKMLFIGRACVDNQILVGSYNKDKGTVYVPYK 419
+ ++ +F ++ I+ G NK K ++ Y+
Sbjct: 99 LNFNEYVF-STDMQESDIVFGGVNKLKDAIHEAYE 132
>sp|Q04704|V6B_CVCAE Protein 6B
Length = 213
Score = 31.2 bits (69), Expect = 1.7
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 132 GSRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIQNST-KLVWKWTDGKNLPENAIM 308
G+ + IEG C++ GYK AY+H +Y + + + K D + ++
Sbjct: 62 GAEIYCDEIEGFPCSWPGYKAYAYNHIDYHFDLSSPFYSFVDKFYISLGDREEKIHLRVV 121
Query: 309 GGHDGDKMLFIG 344
G DK L +G
Sbjct: 122 GATPKDKRLTVG 133
>sp|P53616|SUN4_YEAST Septation protein SUN4 precursor (Soluble cell wall protein 3)
Length = 420
Score = 30.4 bits (67), Expect = 2.8
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Frame = +3
Query: 15 IVKDQTDNQTKWERHENGNIPCGAVYAGGRCYIVRVMHEG---------SRLVGSIIEGE 167
I D D +E+ E+G IPCG +G + + EG + GS EG
Sbjct: 149 IYGDLADFSGPYEKFEDGTIPCGQFPSGQGVIPISWLDEGGWSGVENTDTSTGGSCKEGS 208
Query: 168 NCAYCGYKGVAYSHY 212
C+Y G++ + +
Sbjct: 209 YCSYACQPGMSKTQW 223
>sp|Q37370|COX1_ACACA Cytochrome c oxidase subunit 1+2 (Cytochrome c oxidase polypeptide
I+II)
Length = 873
Score = 29.6 bits (65), Expect = 4.8
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 449 ITAFYFEFFAFVWNINGSFIFIVRSN*NLIVNTCSTNE*HFVSIMSTHYCIFR*IFSICP 270
I FY + AF N I +V S +NT S N F SI ST F F
Sbjct: 479 IVFFYLIYLAFNNNNTPKLIKLVHSIFAPYINTLSKNLLTFASIKSTSDSSF---FKFSK 535
Query: 269 FPY*FSAVLN--FCFYENLIFIMRISNSF 189
F F L+ F FY++L+ + +NS+
Sbjct: 536 FFIFFMVSLSVLFIFYDSLLCLNDHTNSW 564
>sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial glycogen] synthase)
Length = 479
Score = 29.3 bits (64), Expect = 6.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 162 GENCAYCGYKGVAYSHYEYQIFVETEIQNSTKLVWKWTDG 281
GE+ YCG K + +H +Y + + L W DG
Sbjct: 68 GEHAMYCGIKTLTVAHVQYYLIDNLDYFGREGLYGYWDDG 107
>sp|P82984|OR65C_DROME Putative odorant receptor 65c
Length = 385
Score = 29.3 bits (64), Expect = 6.3
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = -3
Query: 498 KLLCLNTLIKHQRCIKYHSLLLRILCLCMEHKRFLYLYCKIQLKFDCQHMLYQ*ITFCLH 319
++LCL HQRC Y L L L H++ +++ F
Sbjct: 212 EVLCLELRHLHQRCHGYEQLRLETNRLVQFHQKIVHILDHTNKVF--------------- 256
Query: 318 HVHPLLHFQVNFFHLSISIL 259
H ++ VNFF +S+S+L
Sbjct: 257 HGTLIMQMGVNFFLVSLSVL 276
>sp|Q9UPU5|UBP24_HUMAN Ubiquitin carboxyl-terminal hydrolase 24 (Ubiquitin thiolesterase
24) (Ubiquitin-specific processing protease 24)
(Deubiquitinating enzyme 24)
Length = 977
Score = 29.3 bits (64), Expect = 6.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 128 MHHSNYIASSTCIHCTTWNISILMTFP 48
MHHSN++ SS C C + +++ P
Sbjct: 842 MHHSNHVDSSRCYQCVKFLVTLAQKCP 868
>sp|Q72CF4|RPOA_DESVH DNA-directed RNA polymerase alpha chain (RNAP alpha subunit)
(Transcriptase alpha chain) (RNA polymerase alpha
subunit)
Length = 347
Score = 28.9 bits (63), Expect = 8.2
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +3
Query: 99 GRCYIVRVMHEG-SRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIQNSTKLVWK-W 272
G+ Y+ MHEG S +G I + ++ + VAY+ + ++ ++ N KL+ + W
Sbjct: 160 GKGYVPADMHEGLSEEIGLI--KLDASFSPVRKVAYTVEQARV---GQMTNYDKLILEVW 214
Query: 273 TDGKNLPENAI 305
TDG PE+AI
Sbjct: 215 TDGSVSPEDAI 225
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,744,556
Number of Sequences: 369166
Number of extensions: 1370924
Number of successful extensions: 3998
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3991
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3650218350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)