Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_E01
(699 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 74 3e-13
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 71 2e-12
sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmi... 71 3e-12
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 70 4e-12
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 70 4e-12
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 70 4e-12
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 70 4e-12
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 70 7e-12
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 70 7e-12
sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-sp... 70 7e-12
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 74.3 bits (181), Expect = 3e-13
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Frame = +1
Query: 28 TQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIV 195
+QV+G VKWF+ K+GYGFI+ DD +D+FVH DGE+V FD+V
Sbjct: 31 SQVSGTVKWFNVKSGYGFINRDD--TKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVV 88
Query: 196 QGAKGLEARNVTGPNGGDVIGGK 264
+G KG EA NVTGP G +V G K
Sbjct: 89 EGEKGNEAANVTGPEGSNVQGSK 111
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 71.2 bits (173), Expect = 2e-12
Identities = 39/83 (46%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Frame = +1
Query: 28 TQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIV 195
TQV G VKWF+ +NGYGFI+ +D + +D+FVH DGE V FD+V
Sbjct: 40 TQVQGTVKWFNVRNGYGFINRND--SKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVV 97
Query: 196 QGAKGLEARNVTGPNGGDVIGGK 264
+G KG EA NVTGP G V G +
Sbjct: 98 EGEKGAEAANVTGPGGVPVKGSR 120
>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
(mRNP4)
Length = 336
Score = 70.9 bits (172), Expect = 3e-12
Identities = 39/83 (46%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Frame = +1
Query: 28 TQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIV 195
TQV G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V
Sbjct: 40 TQVQGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVV 97
Query: 196 QGAKGLEARNVTGPNGGDVIGGK 264
+G KG EA NVTGP G V G +
Sbjct: 98 EGEKGAEAANVTGPGGVPVKGSR 120
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 70.5 bits (171), Expect = 4e-12
Identities = 39/83 (46%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Frame = +1
Query: 28 TQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIV 195
T+V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V
Sbjct: 35 TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 92
Query: 196 QGAKGLEARNVTGPNGGDVIGGK 264
+G KG EA NVTGP G V G K
Sbjct: 93 EGEKGAEAANVTGPEGVPVQGSK 115
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 70.5 bits (171), Expect = 4e-12
Identities = 39/83 (46%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Frame = +1
Query: 28 TQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIV 195
T+V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V
Sbjct: 55 TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 112
Query: 196 QGAKGLEARNVTGPNGGDVIGGK 264
+G KG EA NVTGP G V G K
Sbjct: 113 EGEKGAEAANVTGPGGVPVQGSK 135
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 70.5 bits (171), Expect = 4e-12
Identities = 39/83 (46%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Frame = +1
Query: 28 TQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIV 195
T+V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V
Sbjct: 57 TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 114
Query: 196 QGAKGLEARNVTGPNGGDVIGGK 264
+G KG EA NVTGP G V G K
Sbjct: 115 EGEKGAEAANVTGPGGVPVQGSK 137
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 70.5 bits (171), Expect = 4e-12
Identities = 39/83 (46%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Frame = +1
Query: 28 TQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIV 195
T+V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V
Sbjct: 54 TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 111
Query: 196 QGAKGLEARNVTGPNGGDVIGGK 264
+G KG EA NVTGP G V G K
Sbjct: 112 EGEKGAEAANVTGPGGVPVQGSK 134
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 69.7 bits (169), Expect = 7e-12
Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Frame = +1
Query: 28 TQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIV 195
T+V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V
Sbjct: 81 TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 138
Query: 196 QGAKGLEARNVTGPNGGDVIGGK 264
+G KG EA NVTGP+G V G +
Sbjct: 139 EGEKGAEAANVTGPDGVPVEGSR 161
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 69.7 bits (169), Expect = 7e-12
Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Frame = +1
Query: 28 TQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIV 195
T+V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V
Sbjct: 89 TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 146
Query: 196 QGAKGLEARNVTGPNGGDVIGGK 264
+G KG EA NVTGP+G V G +
Sbjct: 147 EGEKGAEAANVTGPDGVPVEGSR 169
>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(Contrin) (MSY2 homolog)
Length = 364
Score = 69.7 bits (169), Expect = 7e-12
Identities = 40/86 (46%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +1
Query: 31 QVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQ 198
QV G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+
Sbjct: 93 QVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVE 150
Query: 199 GAKGLEARNVTGPNGGDVIGGKPYEP 276
G KG EA NVTGP GG + G Y P
Sbjct: 151 GEKGAEATNVTGP-GGVPVKGSRYAP 175
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,104,196
Number of Sequences: 369166
Number of extensions: 865556
Number of successful extensions: 3336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2945
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6073541875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)