Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_D21
(760 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8RB67|DNAJ_THETN Chaperone protein dnaJ 72 2e-12
sp|P73097|DNAJ2_SYNY3 Chaperone protein dnaJ 2 69 2e-11
sp|Q73IV4|DNAJ_WOLPM Chaperone protein dnaJ 65 2e-10
sp|Q38813|DNAJ1_ARATH Chaperone protein dnaJ 1, mitochondri... 65 3e-10
sp|O66921|DNAJ2_AQUAE Chaperone protein dnaJ 2 65 3e-10
sp|Q5P9E0|DNAJ_ANAMM Chaperone protein dnaJ 65 3e-10
sp|Q9D844|DNJC4_MOUSE DnaJ homolog subfamily C member 4 (Mu... 64 3e-10
sp|Q72GN6|DNAJ_THET2 Chaperone protein dnaJ 64 4e-10
sp|Q5SLW9|DNAJ1_THET8 Chaperone protein dnaJ 1 64 4e-10
sp|O25890|DNAJ_HELPY Chaperone protein dnaJ 64 4e-10
>sp|Q8RB67|DNAJ_THETN Chaperone protein dnaJ
Length = 384
Score = 72.0 bits (175), Expect = 2e-12
Identities = 36/75 (48%), Positives = 50/75 (66%)
Frame = +3
Query: 75 KSYYDILEVPLHASSQEIKESYLRLAKLFHPDLHPKNEEYHRKFLLINEAYSILSRSTEK 254
K Y+IL V +AS +EIK++Y RLAK +HPDL+P ++E +KF INEAY ILS ++
Sbjct: 4 KDLYEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKR 63
Query: 255 EEYDMRFHLRSMEGG 299
+YD H +GG
Sbjct: 64 AQYDQFGHAAFEQGG 78
>sp|P73097|DNAJ2_SYNY3 Chaperone protein dnaJ 2
Length = 307
Score = 68.6 bits (166), Expect = 2e-11
Identities = 30/70 (42%), Positives = 50/70 (71%)
Frame = +3
Query: 63 IDSPKSYYDILEVPLHASSQEIKESYLRLAKLFHPDLHPKNEEYHRKFLLINEAYSILSR 242
++ ++YY IL VP +A+++EIK+S+ +LA+ +HPD++P ++ KF INEAY +LS
Sbjct: 1 MEQVRNYYQILGVPRNATAEEIKKSFRKLARQYHPDVNPNDKTAEEKFKDINEAYDVLSD 60
Query: 243 STEKEEYDMR 272
T++ E D R
Sbjct: 61 ETKRRELDSR 70
>sp|Q73IV4|DNAJ_WOLPM Chaperone protein dnaJ
Length = 372
Score = 65.5 bits (158), Expect = 2e-10
Identities = 32/70 (45%), Positives = 44/70 (62%)
Frame = +3
Query: 69 SPKSYYDILEVPLHASSQEIKESYLRLAKLFHPDLHPKNEEYHRKFLLINEAYSILSRST 248
S K YYD+LEV +AS EIK++Y +LA +HPD +P N+E KF + AY +LS S
Sbjct: 2 SKKDYYDLLEVGRNASIDEIKKAYKKLALRYHPDRNPGNQEAEEKFKEVTAAYEVLSDSE 61
Query: 249 EKEEYDMRFH 278
++ YD H
Sbjct: 62 KRAGYDRYGH 71
>sp|Q38813|DNAJ1_ARATH Chaperone protein dnaJ 1, mitochondrial precursor (AtJ1) (AtDjB1)
Length = 408
Score = 64.7 bits (156), Expect = 3e-10
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 27 KPLF--FCKRCFAEIDSPKSYYDILEVPLHASSQEIKESYLRLAKLFHPDLHPKNEEYHR 200
KPLF + S ++YYD+L V A+ +EIK+S+ LAK FHPD + N R
Sbjct: 29 KPLFERYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKR 88
Query: 201 KFLLINEAYSILSRSTEKEEYD 266
KF I EAY L S +EEYD
Sbjct: 89 KFQEIREAYETLGNSERREEYD 110
>sp|O66921|DNAJ2_AQUAE Chaperone protein dnaJ 2
Length = 376
Score = 64.7 bits (156), Expect = 3e-10
Identities = 33/68 (48%), Positives = 45/68 (66%)
Frame = +3
Query: 75 KSYYDILEVPLHASSQEIKESYLRLAKLFHPDLHPKNEEYHRKFLLINEAYSILSRSTEK 254
K YY+IL VP +AS +EIK++Y RL + +HPD+ K E KF INEAY +LS ++
Sbjct: 7 KDYYEILGVPRNASQEEIKKAYRRLVRKYHPDI-CKKPECEEKFKEINEAYQVLSDPEKR 65
Query: 255 EEYDMRFH 278
+ YDM H
Sbjct: 66 KLYDMYGH 73
>sp|Q5P9E0|DNAJ_ANAMM Chaperone protein dnaJ
Length = 379
Score = 64.7 bits (156), Expect = 3e-10
Identities = 31/79 (39%), Positives = 48/79 (60%)
Frame = +3
Query: 69 SPKSYYDILEVPLHASSQEIKESYLRLAKLFHPDLHPKNEEYHRKFLLINEAYSILSRST 248
S YY+ILEV +AS++EIK+SY ++ +HPD +P +++ KF I+EAY +LS
Sbjct: 2 SGNDYYEILEVSRNASAEEIKKSYRKMVFKYHPDKNPGDKKAEEKFKKISEAYEVLSNPE 61
Query: 249 EKEEYDMRFHLRSMEGGVA 305
++ YD H GG +
Sbjct: 62 KRAAYDRYGHSTFTSGGAS 80
>sp|Q9D844|DNJC4_MOUSE DnaJ homolog subfamily C member 4 (Multiple endocrine neoplasia
type 1 candidate protein number 18 homolog)
Length = 244
Score = 64.3 bits (155), Expect = 3e-10
Identities = 37/118 (31%), Positives = 54/118 (45%)
Frame = +3
Query: 72 PKSYYDILEVPLHASSQEIKESYLRLAKLFHPDLHPKNEEYHRKFLLINEAYSILSRSTE 251
P +YY++L V AS++EIK ++ +K HPD P N H +F+ +NEAY +LSR
Sbjct: 35 PTNYYELLGVHPGASAEEIKRAFFTKSKELHPDRDPGNPALHSRFVELNEAYRVLSREES 94
Query: 252 KEEYDMRFHLRSMEGGVAPPNPWSVVYPSPPRPDDSEVIKETYKNQTFKMWMDRGKQW 425
+ YD + H SPP+ S + Y QT W Q+
Sbjct: 95 RRNYDHQLH-----------------SASPPKSSGS-TAEPKYTQQTHSSWEPPNAQY 134
>sp|Q72GN6|DNAJ_THET2 Chaperone protein dnaJ
Length = 350
Score = 63.9 bits (154), Expect = 4e-10
Identities = 34/73 (46%), Positives = 47/73 (64%)
Frame = +3
Query: 75 KSYYDILEVPLHASSQEIKESYLRLAKLFHPDLHPKNEEYHRKFLLINEAYSILSRSTEK 254
K YY IL V AS +EIK++Y RLA +HPD +P ++E +F INEAY++LS ++
Sbjct: 2 KDYYAILGVSREASQEEIKKAYRRLALKYHPDRNPGDKEAEERFKEINEAYAVLSDPKKR 61
Query: 255 EEYDMRFHLRSME 293
YD R HL + E
Sbjct: 62 AAYD-RGHLEAPE 73
>sp|Q5SLW9|DNAJ1_THET8 Chaperone protein dnaJ 1
Length = 350
Score = 63.9 bits (154), Expect = 4e-10
Identities = 34/73 (46%), Positives = 47/73 (64%)
Frame = +3
Query: 75 KSYYDILEVPLHASSQEIKESYLRLAKLFHPDLHPKNEEYHRKFLLINEAYSILSRSTEK 254
K YY IL V AS +EIK++Y RLA +HPD +P ++E +F INEAY++LS ++
Sbjct: 2 KDYYAILGVSREASQEEIKKAYRRLALKYHPDRNPGDKEAEERFKEINEAYAVLSDPKKR 61
Query: 255 EEYDMRFHLRSME 293
YD R HL + E
Sbjct: 62 AAYD-RGHLEAPE 73
>sp|O25890|DNAJ_HELPY Chaperone protein dnaJ
Length = 369
Score = 63.9 bits (154), Expect = 4e-10
Identities = 30/63 (47%), Positives = 43/63 (68%)
Frame = +3
Query: 78 SYYDILEVPLHASSQEIKESYLRLAKLFHPDLHPKNEEYHRKFLLINEAYSILSRSTEKE 257
SYY+ILEV H++ + IK+SY +LA +HPD + ++E KF LINEAY +LS ++
Sbjct: 4 SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63
Query: 258 EYD 266
YD
Sbjct: 64 LYD 66
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,002,714
Number of Sequences: 369166
Number of extensions: 1889699
Number of successful extensions: 5411
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5283
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)