Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_D16
(626 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20828|GAG2_DROME Retrovirus-related Gag polyprotein fro... 31 3.0
sp|Q9GKY1|B3A4_RABIT Anion exchange protein 4 (Anion exchan... 29 8.6
>sp|P20828|GAG2_DROME Retrovirus-related Gag polyprotein from transposon 297
Length = 414
Score = 30.8 bits (68), Expect = 3.0
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 201 NHPS-SRSARPPRANFTFTFSCIYLRPLRRRWNASIRRNPPCWRQQRWQRP 52
N PS S+ ++P + NF Y++P R + I NPP W + RP
Sbjct: 227 NRPSYSQYSQPFQPNFNQ-----YIQPFRPSYTQQITNNPPMWHAPNYFRP 272
>sp|Q9GKY1|B3A4_RABIT Anion exchange protein 4 (Anion exchanger 4) (Solute carrier family
4 member 9)
Length = 955
Score = 29.3 bits (64), Expect = 8.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 61 PSLLPPTRRVPPDRCIPAAAEGAEVNT*KSKGKICTRRAGA 183
P PT R+PP RC+P+ + ++ K KG R A
Sbjct: 296 PGRWDPTARIPPPRCLPSRHKRPPLHLQKVKGLSVPHRTQA 336
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,687,140
Number of Sequences: 369166
Number of extensions: 988005
Number of successful extensions: 2497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2492
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)