Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_D13
(950 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96YR5|RAD50_SULTO DNA double-strand break repair rad50 ... 43 0.001
sp|Q9JIX8|ACINU_MOUSE Apoptotic chromatin condensation indu... 42 0.003
sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent pr... 41 0.004
sp|P15924|DESP_HUMAN Desmoplakin (DP) (250/210 kDa paraneop... 40 0.010
sp|Q14151|SAFB2_HUMAN Scaffold attachment factor B2 39 0.022
sp|O75781|PALM_HUMAN Paralemmin 39 0.028
sp|P53935|YNJ1_YEAST Hypothetical 141.5 kDa protein in YPT5... 39 0.028
sp|P46504|YLX8_CAEEL Hypothetical protein F23F12.8 in chrom... 39 0.028
sp|Q07283|TRHY_HUMAN Trichohyalin 38 0.037
sp|Q09863|YAFA_SCHPO Hypothetical protein C29E6.10c in chro... 38 0.048
>sp|Q96YR5|RAD50_SULTO DNA double-strand break repair rad50 ATPase
Length = 879
Score = 43.1 bits (100), Expect = 0.001
Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Frame = +1
Query: 4 LIENQRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDR 183
+IE Q K E SE + +K+K LE I ++L + ++K Y+D ++ E +
Sbjct: 183 IIELQSLEKYKNE-SENQKIQKEKELENIKRELEDLNIKEEKERKKYEDIVKLNEEEEKK 241
Query: 184 ERREWQL--QMDRLKDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQDNIERARQKAID 354
E+R +L +++LKD+I +LR ++ N + R + LE D+ E+D + ++K I+
Sbjct: 242 EKRYVELISLLNKLKDDISELREEVKDEN-RLREEKEKLEKDI-LEKDKLIEEKEKIIE 298
>sp|Q9JIX8|ACINU_MOUSE Apoptotic chromatin condensation inducer in the nucleus (Acinus)
Length = 1338
Score = 42.0 bits (97), Expect = 0.003
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Frame = +1
Query: 10 ENQRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSP-----------VQQKNYDDDL 156
+++ K+S K+E ++E P K +L L + K +P + QK +
Sbjct: 1189 KSKEKKSEKKEKAQEEPPAK------LLDDLFRKTKAAPCIYWLPLTESQIVQKEAEQAE 1242
Query: 157 RRMLSEFDRERREWQLQMDRLKDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQDNIERA 336
R E R+ RE + Q +R K+ + QL +K R H + E D + E+D +R
Sbjct: 1243 RAKEREKRRKEREEEEQKEREKEAERERNRQL--EREKRREHSRERERDRERERDRGDRE 1300
Query: 337 RQKAID 354
R++ D
Sbjct: 1301 RERERD 1306
>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein
(NMCP1-like)
Length = 1042
Score = 41.2 bits (95), Expect = 0.004
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Frame = +1
Query: 1 YLIENQRKRSPKREHSEERPAEKDKTLE---LILQKLMEQRKGSPVQQKNYDDDLRRMLS 171
Y IEN+R+ E+ E++K LE + K M +++ VQ + D R+
Sbjct: 657 YCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEI 716
Query: 172 EFDRERREWQLQMDRLKDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQDNIER 333
+ DRERRE + LKD +E+L+ Q + R L+ D++ HE + +++
Sbjct: 717 KLDRERRE--REWAELKDSVEELKVQREKL-ETQRHMLRAERDEIRHEIEELKK 767
>sp|P15924|DESP_HUMAN Desmoplakin (DP) (250/210 kDa paraneoplastic pemphigus antigen)
Length = 2871
Score = 40.0 bits (92), Expect = 0.010
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Frame = +1
Query: 13 NQRKRSPKREHSEERPAEKD--------KTLELILQKLMEQRKGSPVQQKNYDDDLRRML 168
N+ KR+ + + + E++ K + + L +Q + + + +K +DDLR+
Sbjct: 1578 NRLKRTASEDSCKRKKLEEELEGMRRSLKEQAIKITNLTQQLEQASIVKKRSEDDLRQQR 1637
Query: 169 SEFD---RERREWQLQMDRLKDEIEKLRHQLWLANQK-PRSHLKNLEDDLDHEQDNIE 330
D RE++ Q ++ RL E+E LR QL + ++HL+N +H Q IE
Sbjct: 1638 DVLDGHLREKQRTQEELRRLSSEVEALRRQLLQEQESVKQAHLRN-----EHFQKAIE 1690
>sp|Q14151|SAFB2_HUMAN Scaffold attachment factor B2
Length = 953
Score = 38.9 bits (89), Expect = 0.022
Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Frame = +1
Query: 19 RKRSPKREHSEERPAE-KDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDRERRE 195
++RS K S++R +E K+K L K+ EQR+ +Q+ + ++R +RE+RE
Sbjct: 592 KERSSK---SQDRKSESKEKRDILSFDKIKEQRERE--RQRQREREIRETERRREREQRE 646
Query: 196 WQLQMDRLKDEIEKLRHQ---LWLANQKPRSHLKNLE-DDLDHEQDNIERARQK 345
+ +++ + EK R Q L L Q+ R + +E + L+ E+ +ER R+K
Sbjct: 647 REQRLEAFHERKEKARLQRERLQLECQRQRLERERMERERLERERMRVERERRK 700
>sp|O75781|PALM_HUMAN Paralemmin
Length = 387
Score = 38.5 bits (88), Expect = 0.028
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +1
Query: 7 IENQRKRSPKREHSEERPAEKDKTLELILQKLMEQR---KGSPVQQKNYDDDLRRMLSEF 177
I +RKR + E+ + ++ + L+ + K + +R +G+P D+DLRR + +
Sbjct: 18 IAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTPSSASEGDEDLRRQMQDD 77
Query: 178 DRERREWQLQMDRLKDEIEKL 240
+++ R + + RL+ EIE L
Sbjct: 78 EQKTRLLEDSVSRLEKEIEVL 98
>sp|P53935|YNJ1_YEAST Hypothetical 141.5 kDa protein in YPT53-RHO2 intergenic region
Length = 1240
Score = 38.5 bits (88), Expect = 0.028
Identities = 29/116 (25%), Positives = 56/116 (48%)
Frame = +1
Query: 7 IENQRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDRE 186
++ K KR+ EE+ K + E +++ QRK ++ D++ +R L E R
Sbjct: 658 LQQLAKEEEKRKREEEKERLKKELEEREMRRREAQRKKVEEAKRKKDEERKRRLEEQQR- 716
Query: 187 RREWQLQMDRLKDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQDNIERARQKAID 354
R E Q + + K+E+++ R + ++ R + ++ L E++ ER R A D
Sbjct: 717 REEMQEKQRKQKEELKRKREE---EKKRIREQKRLEQEKLQKEKEEEERQRLIAED 769
Score = 34.7 bits (78), Expect = 0.41
Identities = 23/93 (24%), Positives = 45/93 (48%)
Frame = +1
Query: 19 RKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDRERREW 198
R+R +R+ EE +KD+ + L++ + + Q+K ++ R+ E R R +
Sbjct: 687 RRREAQRKKVEEAKRKKDEERKRRLEEQQRREEMQEKQRKQKEELKRKREEEKKRIREQK 746
Query: 199 QLQMDRLKDEIEKLRHQLWLANQKPRSHLKNLE 297
+L+ ++L+ E E+ Q +A R N E
Sbjct: 747 RLEQEKLQKEKEEEERQRLIAEDALRKQKLNEE 779
Score = 32.7 bits (73), Expect = 1.5
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +1
Query: 10 ENQRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDRER 189
E ++KR + + ++R EK+K L K E+RK +++ L++ L E + R
Sbjct: 634 EKRKKREKEEKKQKKREKEKEKKRLQQLAKEEEKRKREEEKER-----LKKELEEREMRR 688
Query: 190 REWQL----QMDRLKDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQDNIERARQK 345
RE Q + R KDE K R L Q+ R + +++ +++ ++R R++
Sbjct: 689 REAQRKKVEEAKRKKDEERKRR----LEEQQRR---EEMQEKQRKQKEELKRKREE 737
>sp|P46504|YLX8_CAEEL Hypothetical protein F23F12.8 in chromosome III precursor
Length = 887
Score = 38.5 bits (88), Expect = 0.028
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Frame = +1
Query: 16 QRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDRERR- 192
++KR +R EE E K EL +L QRK V+Q+ + + L E +R+R+
Sbjct: 381 EKKRENERVRQEEIAMEISKIRELERLQLERQRKNERVRQE-LEAARKYKLQEEERQRKI 439
Query: 193 -EWQLQMDRLKDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQDNIERARQKAID 354
+ +++M++++ + E + QL + ++ L+ + + Q +E RQ+ D
Sbjct: 440 QQQKVEMEQIRQQEEARQEQLRVLEEERARELERVRQEELERQHQMEILRQQEED 494
Score = 36.2 bits (82), Expect = 0.14
Identities = 25/120 (20%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Frame = +1
Query: 10 ENQRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSE----- 174
E+Q+K+ +++ + E ++ +I++K M++ K +++KN L + + +
Sbjct: 493 EDQKKKKLEKDREQREQQEAEELNRMIIEKEMKENKQKMIEEKNKRKMLEKEMEDRQNAI 552
Query: 175 FDRERREWQLQMDRLKDEIE---KLRHQLWLANQKPRSHLKNLEDDLDHEQDNIERARQK 345
++ E R + R + EIE +++ Q+ +A ++ RS L +E + + + E +Q+
Sbjct: 553 YEEEERRIAEEERRKQIEIEERRRIQQQIMIATEE-RSRLDAMEREREMLRQIKESEKQR 611
Score = 31.6 bits (70), Expect = 3.4
Identities = 25/114 (21%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Frame = +1
Query: 16 QRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDRERRE 195
+++ ++E E+ + LE + Q+ +E++ + ++ +D ++ L E DRE+RE
Sbjct: 450 RQQEEARQEQLRVLEEERARELERVRQEELERQHQMEILRQQEEDQKKKKL-EKDREQRE 508
Query: 196 WQ--LQMDRLKDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQDNIERARQKAI 351
Q +++R+ E E ++ + +K + K LE +++ Q+ I ++ I
Sbjct: 509 QQEAEELNRMIIEKEMKENKQKMIEEKNKR--KMLEKEMEDRQNAIYEEEERRI 560
>sp|Q07283|TRHY_HUMAN Trichohyalin
Length = 1898
Score = 38.1 bits (87), Expect = 0.037
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Frame = +1
Query: 10 ENQRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRML-SEFDRE 186
E +R++ +R +ER ++++ E L++ E+R+ ++++ ++ + L E + E
Sbjct: 312 EERREQQEERREQQERREQQEERREQQLRREQEERREQQLRREQEEERREQQLRREQEEE 371
Query: 187 RREWQLQMDRLKDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQ 318
RRE QL R + E E+ QL Q R E L EQ
Sbjct: 372 RREQQL---RREQEEERREQQLRREQQLRREQQLRREQQLRREQ 412
Score = 34.7 bits (78), Expect = 0.41
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 10 ENQRKRSPKREHSEERPAEKDKTLELILQK-LMEQRKGSPVQQKNYDDDLRRMLSEFDRE 186
E+QR+ P+ EE P ++ + ++ L E + S Q++ D +R E R+
Sbjct: 117 EDQRRFEPRDRQLEEEPGQRRRQKRQEQERELAEGEEQSEKQERLEQRDRQRRDEELWRQ 176
Query: 187 RREWQLQMDRLKDE 228
R+EWQ + +R +E
Sbjct: 177 RQEWQEREERRAEE 190
Score = 34.7 bits (78), Expect = 0.41
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Frame = +1
Query: 16 QRKRSPKREHSEERPAEKDKTLELILQKLM---EQRKGSPVQQKNY--DDDLRRMLSEFD 180
+ +R +R ER KDK L+ ++L+ +++ ++K Y +++L++ +
Sbjct: 962 REEREKRRRQERERQYRKDKKLQQKEEQLLGEEPEKRRRQEREKKYREEEELQQEEEQLL 1021
Query: 181 RE------RREWQLQMDRLKDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQD 321
RE R+EW+ Q R KDE+++ QL L ++ + L+ E E++
Sbjct: 1022 REEREKRRRQEWERQY-RKKDELQQEEEQL-LREEREKRRLQERERQYREEEE 1072
Score = 33.5 bits (75), Expect = 0.91
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Frame = +1
Query: 10 ENQRKRSPKREHSEERPAEKDKTLELILQKLME-QRKGSPVQQKNYDDDLRRMLSEFDRE 186
E ++ +S K +EE P E+ +L ++L+E +RKG +Q+ + R+ E E
Sbjct: 189 EEEQLQSCKGHETEEFPDEE----QLRRRELLELRRKGREEKQQQRRERQDRVFQE--EE 242
Query: 187 RREWQLQMDRLKDEIEKLRH---QLWLANQKPRSHLKNLE-DDLDHEQDNIERARQK 345
+EW+ + L+ E EKL+ Q Q+ L+ LE +L E+ E+ +Q+
Sbjct: 243 EKEWRKRETVLRKEEEKLQEEEPQRQRELQEEEEQLRKLERQELRRERQEEEQQQQR 299
Score = 33.5 bits (75), Expect = 0.91
Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Frame = +1
Query: 10 ENQRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLR--RMLSEFDR 183
+ +RK+ KR+ EER +++ L+L ++ EQ++ Q + ++ R R+ + +
Sbjct: 488 QERRKQQLKRDQEEER---RERWLKLEEEERREQQERREQQLRREQEERREQRLKRQEEE 544
Query: 184 ERREWQLQMD-RLKDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQD 321
ER + +L+ + +L+ E E+ QL ++ R + E L EQ+
Sbjct: 545 ERLQQRLRSEQQLRREQEERLEQLLKREEEKRLEQERREQRLKREQE 591
Score = 33.5 bits (75), Expect = 0.91
Identities = 24/120 (20%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Frame = +1
Query: 10 ENQRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDRER 189
E +R+R K E E R E+ + E L++ E+R+ ++++ ++ L++ L + R
Sbjct: 501 EERRERWLKLEEEERR--EQQERREQQLRREQEERREQRLKRQEEEERLQQRLRSEQQLR 558
Query: 190 REWQLQMDRL-----KDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQDNIERARQKAID 354
RE + ++++L + +E+ R + L ++ + L+ + + Q ++R +++ ++
Sbjct: 559 REQEERLEQLLKREEEKRLEQERREQRLKREQEERRDQLLKREEERRQQRLKREQEERLE 618
Score = 32.3 bits (72), Expect = 2.0
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Frame = +1
Query: 16 QRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDRERRE 195
+R++ +RE R E+++ + + ++ E+R+ ++++ ++ + L + RRE
Sbjct: 340 RREQEERREQQLRREQEEERREQQLRREQEEERREQQLRREQEEERREQQLRREQQLRRE 399
Query: 196 WQLQMDRLKDEIEKLR--------HQLWLANQKPRSHLKNLEDDLDHEQDNIERARQK 345
QL+ ++ ++LR QL Q R E L EQ+ ER QK
Sbjct: 400 QQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQEE-ERHEQK 456
Score = 31.6 bits (70), Expect = 3.4
Identities = 22/107 (20%), Positives = 53/107 (49%)
Frame = +1
Query: 10 ENQRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDRER 189
E + ++ KRE E E+ + L ++ E+R+ ++ + ++ L +ER
Sbjct: 614 EERLEQRLKREEVERLEQEERRDERLKREEPEEERRHELLKSEEQEERRHEQLRREQQER 673
Query: 190 REWQLQMDRLKDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQDNIE 330
RE +L+ + +E E+L +L +++ R + E++ + ++ I+
Sbjct: 674 REQRLKRE---EEEERLEQRLKREHEEERREQELAEEEQEQARERIK 717
Score = 31.2 bits (69), Expect = 4.5
Identities = 27/111 (24%), Positives = 50/111 (45%)
Frame = +1
Query: 10 ENQRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDRER 189
E Q+++ +RE R E+++ ++ E+R+ +++ ++ + L ER
Sbjct: 293 EEQQQQRLRREQQLRRKQEEER------REQQEERREQQERREQQEERREQQLRREQEER 346
Query: 190 REWQLQMDRLKDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQDNIERARQ 342
RE QL R + E E+ QL ++ R E L EQ+ R +Q
Sbjct: 347 REQQL---RREQEEERREQQLRREQEEERR-----EQQLRREQEEERREQQ 389
Score = 30.4 bits (67), Expect = 7.7
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 14/126 (11%)
Frame = +1
Query: 10 ENQRKRSPKREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDRER 189
E Q +R + ++ E+ E L++ E+ + +QK+ + + L ER
Sbjct: 417 EQQLRREQQLRREQQLRREQQLRREQQLRREQEEERH---EQKHEQERREQRLKREQEER 473
Query: 190 REW------------QLQMDRLKDEIEKLRHQLW--LANQKPRSHLKNLEDDLDHEQDNI 327
R+W + + +LK + E+ R + W L ++ R + E L EQ+
Sbjct: 474 RDWLKREEETERHEQERRKQQLKRDQEEERRERWLKLEEEERREQQERREQQLRREQEER 533
Query: 328 ERARQK 345
R K
Sbjct: 534 REQRLK 539
>sp|Q09863|YAFA_SCHPO Hypothetical protein C29E6.10c in chromosome I
Length = 1085
Score = 37.7 bits (86), Expect = 0.048
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Frame = +1
Query: 10 ENQRKRSP--KREHSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDR 183
EN+RK+ K+ +E+ +K K L+L ++ ++R+ + ++ L E R
Sbjct: 579 ENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEAR 638
Query: 184 ERREWQLQMDRLKDEIEKLRHQLWLANQKPRSHLKNLEDDLDHEQDNIERAR 339
++RE Q RLK E EK + +L ++ + K E L +Q +R +
Sbjct: 639 KKREEQ----RLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREK 686
Score = 32.3 bits (72), Expect = 2.0
Identities = 29/138 (21%), Positives = 64/138 (46%), Gaps = 23/138 (16%)
Frame = +1
Query: 10 ENQRKRSPKRE-----HSEERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRR---- 162
E ++KR K++ E + E ++ E QK +E ++ ++K + L+R
Sbjct: 593 EKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEK 652
Query: 163 MLSEFDRERREWQLQMDRLKDEIEKLRHQLWLANQKPRSHLKNLEDD------------- 303
E +R++RE + + K+ +KL+ Q A+++ + + L ++
Sbjct: 653 KQQELERQKRE---EKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRRE 709
Query: 304 -LDHEQDNIERARQKAID 354
LD E++ ER R++ ++
Sbjct: 710 KLDKEEE--ERRRRELLE 725
Score = 31.6 bits (70), Expect = 3.4
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = +1
Query: 49 EERPAEKDKTLELILQKLMEQRKGSPVQQKNYDDDLRRMLSEFDRERREWQLQMDRLKDE 228
E+R E + ++ +L EQR ++K ++L E + E + Q + E
Sbjct: 534 EQRMEEGRRMFQIFAARLFEQRVLQAYREKVAQQRQAKLLEEIEEENKRKQ------ERE 587
Query: 229 IEKLRHQLWLANQKPRSHLKNLEDDLDHEQDNI-ERARQKAID 354
++K+R + ++K + L E+ E + + E+A QKA++
Sbjct: 588 LKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALE 630
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,311,777
Number of Sequences: 369166
Number of extensions: 1840559
Number of successful extensions: 7178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7129
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9895030780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)