Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_D12
(836 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5R4R6|SRP54_PONPY Signal recognition particle 54 kDa pr... 480 e-135
sp|P14576|SRP54_MOUSE Signal recognition particle 54 kDa pr... 479 e-135
sp|Q6AYB5|SRP54_RAT Signal recognition particle 54 kDa prot... 477 e-134
sp|Q8MZJ6|SRP54_GEOCY Signal recognition particle 54 kDa pr... 444 e-124
sp|P49972|SR542_LYCES Signal recognition particle 54 kDa pr... 384 e-106
sp|P49969|SR542_HORVU Signal recognition particle 54 kDa pr... 374 e-103
sp|P49968|SR541_HORVU Signal recognition particle 54 kDa pr... 370 e-102
sp|P49967|SR543_ARATH Signal recognition particle 54 kDa pr... 370 e-102
sp|P49971|SR541_LYCES Signal recognition particle 54 kDa pr... 366 e-101
sp|P49970|SR543_HORVU Signal recognition particle 54 kDa pr... 362 e-100
>sp|Q5R4R6|SRP54_PONPY Signal recognition particle 54 kDa protein (SRP54)
sp|Q4R965|SRP54_MACFA Signal recognition particle 54 kDa protein (SRP54)
sp|P61011|SRP54_HUMAN Signal recognition particle 54 kDa protein (SRP54)
sp|P61010|SRP54_CANFA Signal recognition particle 54 kDa protein (SRP54)
Length = 504
Score = 480 bits (1235), Expect = e-135
Identities = 235/278 (84%), Positives = 257/278 (92%)
Frame = +1
Query: 1 IAVGMNKRRMIQQAVFHELVKILNPGTKAWTPVKGKPNVVMFVGLQGSGKTTTVTKMAHY 180
+A G+NKR+MIQ AVF ELVK+++PG KAWTP KGK NV+MFVGLQGSGKTTT +K+A+Y
Sbjct: 65 MASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 124
Query: 181 YQKKHWKTCMICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVVIAQEGVEQFKNDNF 360
YQ+K WKTC+ICADTFRAGAFDQLKQNATKARIPFYGSYTE DPV+IA EGVE+FKN+NF
Sbjct: 125 YQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENF 184
Query: 361 EIIIVDTSGRHKQEDSLFEEMLQVANTIKPDNIVYVMDASIGQACEAQAKAFKECVDVAS 540
EIIIVDTSGRHKQEDSLFEEMLQVAN I+PDNIVYVMDASIGQACEAQAKAFK+ VDVAS
Sbjct: 185 EIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVAS 244
Query: 541 VIVTKLDGHAKGGGALSAVAATKSPIIFICTGEHIEDIEPFKVQPFVQKLLGMGDIEGLI 720
VIVTKLDGHAKGGGALSAVAATKSPIIFI TGEHI+D EPFK QPF+ KLLGMGDIEGLI
Sbjct: 245 VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLI 304
Query: 721 DKVNELKLEDNEELAKKLKQGVFTLGDMYEQFQNIMKL 834
DKVNELKL+DNE L +KLK G FTL DMYEQFQNIMK+
Sbjct: 305 DKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKM 342
>sp|P14576|SRP54_MOUSE Signal recognition particle 54 kDa protein (SRP54)
Length = 504
Score = 479 bits (1232), Expect = e-135
Identities = 234/278 (84%), Positives = 257/278 (92%)
Frame = +1
Query: 1 IAVGMNKRRMIQQAVFHELVKILNPGTKAWTPVKGKPNVVMFVGLQGSGKTTTVTKMAHY 180
+A G+NKR+MIQ AVF ELVK+++PG KAWTP KGK NV+MFVGLQGSGKTTT +K+A+Y
Sbjct: 65 MASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 124
Query: 181 YQKKHWKTCMICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVVIAQEGVEQFKNDNF 360
YQ+K WKTC+ICADTFRAGAFDQLKQNATKARIPFYGSYTE DPV+IA EGVE+FKN+NF
Sbjct: 125 YQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENF 184
Query: 361 EIIIVDTSGRHKQEDSLFEEMLQVANTIKPDNIVYVMDASIGQACEAQAKAFKECVDVAS 540
EIIIVDTSGRHKQEDSLFEEMLQV+N I+PDNIVYVMDASIGQACEAQAKAFK+ VDVAS
Sbjct: 185 EIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVAS 244
Query: 541 VIVTKLDGHAKGGGALSAVAATKSPIIFICTGEHIEDIEPFKVQPFVQKLLGMGDIEGLI 720
VIVTKLDGHAKGGGALSAVAATKSPIIFI TGEHI+D EPFK QPF+ KLLGMGDIEGLI
Sbjct: 245 VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLI 304
Query: 721 DKVNELKLEDNEELAKKLKQGVFTLGDMYEQFQNIMKL 834
DKVNELKL+DNE L +KLK G FTL DMYEQFQNIMK+
Sbjct: 305 DKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKM 342
>sp|Q6AYB5|SRP54_RAT Signal recognition particle 54 kDa protein (SRP54)
Length = 504
Score = 477 bits (1228), Expect = e-134
Identities = 233/278 (83%), Positives = 257/278 (92%)
Frame = +1
Query: 1 IAVGMNKRRMIQQAVFHELVKILNPGTKAWTPVKGKPNVVMFVGLQGSGKTTTVTKMAHY 180
+A G+NKR+MIQ AVF ELVK+++PG KAWTP KGK NV+MFVGLQGSGKTTT +K+A++
Sbjct: 65 MASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYF 124
Query: 181 YQKKHWKTCMICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVVIAQEGVEQFKNDNF 360
YQ+K WKTC+ICADTFRAGAFDQLKQNATKARIPFYGSYTE DPV+IA EGVE+FKN+NF
Sbjct: 125 YQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENF 184
Query: 361 EIIIVDTSGRHKQEDSLFEEMLQVANTIKPDNIVYVMDASIGQACEAQAKAFKECVDVAS 540
EIIIVDTSGRHKQEDSLFEEMLQV+N I+PDNIVYVMDASIGQACEAQAKAFK+ VDVAS
Sbjct: 185 EIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVAS 244
Query: 541 VIVTKLDGHAKGGGALSAVAATKSPIIFICTGEHIEDIEPFKVQPFVQKLLGMGDIEGLI 720
VIVTKLDGHAKGGGALSAVAATKSPIIFI TGEHI+D EPFK QPF+ KLLGMGDIEGLI
Sbjct: 245 VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLI 304
Query: 721 DKVNELKLEDNEELAKKLKQGVFTLGDMYEQFQNIMKL 834
DKVNELKL+DNE L +KLK G FTL DMYEQFQNIMK+
Sbjct: 305 DKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKM 342
>sp|Q8MZJ6|SRP54_GEOCY Signal recognition particle 54 kDa protein (SRP54)
Length = 499
Score = 444 bits (1142), Expect = e-124
Identities = 212/278 (76%), Positives = 250/278 (89%)
Frame = +1
Query: 1 IAVGMNKRRMIQQAVFHELVKILNPGTKAWTPVKGKPNVVMFVGLQGSGKTTTVTKMAHY 180
+ G++KRR+IQ +VF+EL K+L+PG W P KG NV+MFVGLQGSGKTTT TK+A++
Sbjct: 64 MGAGLSKRRIIQTSVFNELCKLLDPGVPVWHPTKGHSNVIMFVGLQGSGKTTTCTKLAYH 123
Query: 181 YQKKHWKTCMICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVVIAQEGVEQFKNDNF 360
YQKK WKTC++CADTFRAGAFDQLKQNATKAR+PFYGSYTE DPVVIAQEGVE+FK D+F
Sbjct: 124 YQKKGWKTCLVCADTFRAGAFDQLKQNATKARVPFYGSYTEMDPVVIAQEGVEKFKEDSF 183
Query: 361 EIIIVDTSGRHKQEDSLFEEMLQVANTIKPDNIVYVMDASIGQACEAQAKAFKECVDVAS 540
E+IIVDTSGRHKQE+SLFEEMLQV+ I PDNI++VMD +IGQACE+QA+AFKE VDVAS
Sbjct: 184 EVIIVDTSGRHKQEESLFEEMLQVSQAIDPDNIIFVMDGTIGQACESQARAFKEKVDVAS 243
Query: 541 VIVTKLDGHAKGGGALSAVAATKSPIIFICTGEHIEDIEPFKVQPFVQKLLGMGDIEGLI 720
VIVTKLDGHAKGGGALSAVAAT+SPIIFI TGEHI+++EPFK +PFV KLLGMGD+EGL+
Sbjct: 244 VIVTKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDEMEPFKTKPFVSKLLGMGDLEGLM 303
Query: 721 DKVNELKLEDNEELAKKLKQGVFTLGDMYEQFQNIMKL 834
+KV++LKL++NEEL KLK G FTL DMYEQFQNIMK+
Sbjct: 304 EKVSDLKLDENEELMDKLKHGQFTLRDMYEQFQNIMKM 341
>sp|P49972|SR542_LYCES Signal recognition particle 54 kDa protein 2 (SRP54)
Length = 499
Score = 384 bits (987), Expect = e-106
Identities = 190/279 (68%), Positives = 233/279 (83%), Gaps = 1/279 (0%)
Frame = +1
Query: 1 IAVGMNKRRMIQQAVFHELVKILNPGTKAWTPVKGKPNVVMFVGLQGSGKTTTVTKMAHY 180
+A G NKRR+IQQAVF+EL KIL+PG ++TP KGKP++VMFVGLQGSGKTTT TK A+Y
Sbjct: 65 LAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKPSIVMFVGLQGSGKTTTCTKYAYY 124
Query: 181 YQKKHWKTCMICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVVIAQEGVEQFKNDNF 360
+QKK WK ++CADTFRAGAFDQLKQNATKA+IPFYGSYTE+DPV IA +GVE FK +N
Sbjct: 125 HQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFKKENC 184
Query: 361 EIIIVDTSGRHKQEDSLFEEMLQVANTIKPDNIVYVMDASIGQACEAQAKAFKECVDVAS 540
++IIVDTSGRHKQE +LFEEM QVA KPD +++VMD+SIGQA QA+AFK+ V V +
Sbjct: 185 DLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGA 244
Query: 541 VIVTKLDGHAKGGGALSAVAATKSPIIFICTGEHIEDIEPFKVQPFVQKLLGMGDIEGLI 720
VIVTK+DGHAKGGGALSAVAATKSP+IFI TGEH+++ E F V+PFV +LLGMGD G +
Sbjct: 245 VIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFM 304
Query: 721 DKVNE-LKLEDNEELAKKLKQGVFTLGDMYEQFQNIMKL 834
DK++E + ++ EL +KL +G FTL MYEQFQNI+K+
Sbjct: 305 DKIHEVVPMDQQPELLQKLSEGHFTLRIMYEQFQNILKM 343
>sp|P49969|SR542_HORVU Signal recognition particle 54 kDa protein 2 (SRP54)
Length = 497
Score = 374 bits (959), Expect = e-103
Identities = 184/279 (65%), Positives = 229/279 (82%), Gaps = 1/279 (0%)
Frame = +1
Query: 1 IAVGMNKRRMIQQAVFHELVKILNPGTKAWTPVKGKPNVVMFVGLQGSGKTTTVTKMAHY 180
+A G NKRR+IQQAVF EL +L+PG A+TP KGKP+VVMFVGLQGSGKTTT TK A+Y
Sbjct: 65 LAAGTNKRRIIQQAVFTELCNMLDPGKPAFTPKKGKPSVVMFVGLQGSGKTTTCTKYAYY 124
Query: 181 YQKKHWKTCMICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVVIAQEGVEQFKNDNF 360
+Q+K +K ++CADTFRAGAFDQLKQNATKA+IPFYGSY E+DPV IA EG+E+F+ +N
Sbjct: 125 HQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLERFRKENS 184
Query: 361 EIIIVDTSGRHKQEDSLFEEMLQVANTIKPDNIVYVMDASIGQACEAQAKAFKECVDVAS 540
++II+DTSGRHKQE +LFEEM QVA KPD +++VMD SIGQA QA+AFK+ V +
Sbjct: 185 DLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSASVGA 244
Query: 541 VIVTKLDGHAKGGGALSAVAATKSPIIFICTGEHIEDIEPFKVQPFVQKLLGMGDIEGLI 720
VI+TKLDGHAKGGGALSAVAATKSP+IFI TGEHI++ E F V+PFV +LLGMGD+ GL+
Sbjct: 245 VIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGDLSGLM 304
Query: 721 DKVNELKLEDNE-ELAKKLKQGVFTLGDMYEQFQNIMKL 834
DK+ ++ D + EL KL +G FTL +YEQFQN++K+
Sbjct: 305 DKIQDVMPADQQPELLAKLAEGTFTLRLLYEQFQNLLKM 343
>sp|P49968|SR541_HORVU Signal recognition particle 54 kDa protein 1 (SRP54)
Length = 497
Score = 370 bits (951), Expect = e-102
Identities = 183/279 (65%), Positives = 228/279 (81%), Gaps = 1/279 (0%)
Frame = +1
Query: 1 IAVGMNKRRMIQQAVFHELVKILNPGTKAWTPVKGKPNVVMFVGLQGSGKTTTVTKMAHY 180
+A G NKRR+IQQAVF EL +L+PG A+T KGKP+VVMFVGLQGSGKTTT TK A+Y
Sbjct: 65 LAAGTNKRRIIQQAVFTELCNMLDPGKPAFTTKKGKPSVVMFVGLQGSGKTTTCTKYAYY 124
Query: 181 YQKKHWKTCMICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVVIAQEGVEQFKNDNF 360
+Q+K +K ++CADTFRAGAFDQLKQNATKA+IPFYGSY E+DPV IA EG+E+F+ +N
Sbjct: 125 HQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLERFRKENS 184
Query: 361 EIIIVDTSGRHKQEDSLFEEMLQVANTIKPDNIVYVMDASIGQACEAQAKAFKECVDVAS 540
++II+DTSGRHKQE +LFEEM QVA KPD +++VMD SIGQA QA+AFK+ V +
Sbjct: 185 DLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSASVGA 244
Query: 541 VIVTKLDGHAKGGGALSAVAATKSPIIFICTGEHIEDIEPFKVQPFVQKLLGMGDIEGLI 720
VI+TKLDGHAKGGGALSAVAATKSP+IFI TGEHI++ E F V+PFV +LLGMGD+ GL+
Sbjct: 245 VIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGDLSGLM 304
Query: 721 DKVNELKLEDNE-ELAKKLKQGVFTLGDMYEQFQNIMKL 834
DK+ ++ D + EL KL +G FTL +YEQFQN++K+
Sbjct: 305 DKIQDVMPADQQPELLAKLAEGTFTLRLLYEQFQNLLKM 343
>sp|P49967|SR543_ARATH Signal recognition particle 54 kDa protein 3 (SRP54)
Length = 495
Score = 370 bits (949), Expect = e-102
Identities = 184/279 (65%), Positives = 228/279 (81%), Gaps = 1/279 (0%)
Frame = +1
Query: 1 IAVGMNKRRMIQQAVFHELVKILNPGTKAWTPVKGKPNVVMFVGLQGSGKTTTVTKMAHY 180
+A G NKRR+I+QA+F EL K+L+PG A+ P K K +VVMFVGLQG+GKTTT TK A+Y
Sbjct: 65 LAAGHNKRRIIEQAIFSELCKMLDPGKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYY 124
Query: 181 YQKKHWKTCMICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVVIAQEGVEQFKNDNF 360
+QKK +K ++CADTFRAGAFDQLKQNATKA+IPFYGSYTE+DPV IA EGV+ FK +N
Sbjct: 125 HQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENC 184
Query: 361 EIIIVDTSGRHKQEDSLFEEMLQVANTIKPDNIVYVMDASIGQACEAQAKAFKECVDVAS 540
++IIVDTSGRHKQE SLFEEM QVA KPD +++VMD+SIGQA QA+AFK+ V V +
Sbjct: 185 DLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGA 244
Query: 541 VIVTKLDGHAKGGGALSAVAATKSPIIFICTGEHIEDIEPFKVQPFVQKLLGMGDIEGLI 720
VI+TK+DGHAKGGGALSAVAATKSP+IFI TGEH+++ E F V+PFV +LLGMGD G +
Sbjct: 245 VIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFV 304
Query: 721 DKVNELKLEDNE-ELAKKLKQGVFTLGDMYEQFQNIMKL 834
DK+ E+ +D + EL +KL QG FTL MY+QFQNI+ +
Sbjct: 305 DKLQEVVPKDQQPELLEKLSQGNFTLRIMYDQFQNILNM 343
>sp|P49971|SR541_LYCES Signal recognition particle 54 kDa protein 1 (SRP54)
Length = 496
Score = 366 bits (939), Expect = e-101
Identities = 182/280 (65%), Positives = 232/280 (82%), Gaps = 2/280 (0%)
Frame = +1
Query: 1 IAVGMNKRRMIQQAVFHELVKILNPGTKAWTPVKGKPNVVMFVGLQGSGKTTTVTKMAHY 180
+A G NKRR+IQQAV++EL KIL+PG A+T KGKP+VVMFVGLQGSGKTTT TK A++
Sbjct: 65 LAAGHNKRRIIQQAVYNELCKILDPGKPAFTLKKGKPSVVMFVGLQGSGKTTTCTKYAYH 124
Query: 181 YQKKHWKTCMICADTFRAGAFDQLKQNATKARIPFYGS-YTETDPVVIAQEGVEQFKNDN 357
+QK+ WK ++CADTFRAGAFDQLKQNATKA+IPFYGS YTE+DPV IA +GVE FK +N
Sbjct: 125 HQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSSYTESDPVKIAVDGVETFKKEN 184
Query: 358 FEIIIVDTSGRHKQEDSLFEEMLQVANTIKPDNIVYVMDASIGQACEAQAKAFKECVDVA 537
++IIVDTSGRHKQE +LFEEM QV+ KPD +++VMD+SIGQA QA+AF++ V V
Sbjct: 185 CDLIIVDTSGRHKQEAALFEEMRQVSEAQKPDLVIFVMDSSIGQAAFDQAQAFRQSVAVG 244
Query: 538 SVIVTKLDGHAKGGGALSAVAATKSPIIFICTGEHIEDIEPFKVQPFVQKLLGMGDIEGL 717
+VIVTK+DGHAKGGGALS VAATKSP+IFI TGEH+++ E F V+PFV +LLGMGD+ GL
Sbjct: 245 AVIVTKMDGHAKGGGALSRVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDLSGL 304
Query: 718 IDKVNE-LKLEDNEELAKKLKQGVFTLGDMYEQFQNIMKL 834
++K+ + + ++ EL +KL +G FTL MYEQFQ+++K+
Sbjct: 305 VNKIQDVVPMDQQPELLQKLSEGHFTLRIMYEQFQSMLKM 344
>sp|P49970|SR543_HORVU Signal recognition particle 54 kDa protein 3 (SRP54)
Length = 493
Score = 362 bits (928), Expect = e-100
Identities = 180/279 (64%), Positives = 222/279 (79%), Gaps = 1/279 (0%)
Frame = +1
Query: 1 IAVGMNKRRMIQQAVFHELVKILNPGTKAWTPVKGKPNVVMFVGLQGSGKTTTVTKMAHY 180
+A G NKRR+I+ +V EL K+L+ G A+ P KGKPNVVMFVGLQGSGKTTT TK AHY
Sbjct: 64 LAAGTNKRRIIETSVGKELCKMLDTGKPAFVPKKGKPNVVMFVGLQGSGKTTTCTKYAHY 123
Query: 181 YQKKHWKTCMICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVVIAQEGVEQFKNDNF 360
+Q+K +K ++CADTFRAGAFDQLKQNATKA+IPFYGSY E+DPV IA EG+E+F+ +
Sbjct: 124 HQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLEKFRQEKS 183
Query: 361 EIIIVDTSGRHKQEDSLFEEMLQVANTIKPDNIVYVMDASIGQACEAQAKAFKECVDVAS 540
++II+DTSGRH QE +LFEEM QVA KPD +++VMD SIGQA QA+AFK+ V +
Sbjct: 184 DLIIIDTSGRHMQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSASVGA 243
Query: 541 VIVTKLDGHAKGGGALSAVAATKSPIIFICTGEHIEDIEPFKVQPFVQKLLGMGDIEGLI 720
VIVTKLDGHAKGGGALSAVAATKSP+IFI TGEHI+D + F V+PFV +LLG GD+ GLI
Sbjct: 244 VIVTKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDDFDVFNVEPFVARLLGRGDLPGLI 303
Query: 721 DKVNELKLEDNE-ELAKKLKQGVFTLGDMYEQFQNIMKL 834
DK+ + D + EL KL +G FTL +YEQFQN++K+
Sbjct: 304 DKMESIVPADQQSELVAKLSEGAFTLRLLYEQFQNLLKM 342
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,599,850
Number of Sequences: 369166
Number of extensions: 1846380
Number of successful extensions: 6779
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6682
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)