Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_C13
(387 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14019|COTL1_HUMAN Coactosin-like protein 94 7e-20
sp|Q9CQI6|COTL1_MOUSE Coactosin-like protein 94 1e-19
sp|P34121|COAC_DICDI Coactosin (Cytoskeletal p17 protein) (... 75 4e-14
sp|Q8VHQ7|SYTL4_RAT Synaptotagmin-like protein 4 (Exophilin... 29 3.8
sp|Q886P0|RRF_PSESM Ribosome recycling factor (Ribosome rel... 28 4.9
sp|Q96C24|SYTL4_HUMAN Synaptotagmin-like protein 4 (Exophil... 28 6.5
sp|P36124|SET3_YEAST SET domain protein 3 28 6.5
sp|Q9R0Q1|SYTL4_MOUSE Synaptotagmin-like protein 4 (Exophil... 28 8.4
sp|P09984|HLC1_ECOLI Hemolysin-activating lysine-acyltransf... 28 8.4
sp|Q20060|SMC4_CAEEL Structural maintenance of chromosome 4... 28 8.4
>sp|Q14019|COTL1_HUMAN Coactosin-like protein
Length = 142
Score = 94.4 bits (233), Expect = 7e-20
Identities = 47/93 (50%), Positives = 65/93 (69%)
Frame = +2
Query: 8 YESLLAEFNDDERHFAFVRMITGDEMSKRAKFALITYCGANVSVMKKANLTVDKSLVKEV 187
Y+ + + DD R FAFVR TGD MSKR+KFALIT+ G NVS +++A DK+LVKEV
Sbjct: 45 YQHFIQQCTDDVRLFAFVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEV 104
Query: 188 VASYAVDLFTSVKNEITESKLRAALEKAGGANY 286
V ++A + S + E+ E +++ L+KAGGANY
Sbjct: 105 VQNFAKEFVISDRKELEEDFIKSELKKAGGANY 137
>sp|Q9CQI6|COTL1_MOUSE Coactosin-like protein
Length = 142
Score = 93.6 bits (231), Expect = 1e-19
Identities = 47/93 (50%), Positives = 65/93 (69%)
Frame = +2
Query: 8 YESLLAEFNDDERHFAFVRMITGDEMSKRAKFALITYCGANVSVMKKANLTVDKSLVKEV 187
Y+ + + DD R FAFVR TGD MSKR+KFALIT+ G +VS +++A DK+LVKEV
Sbjct: 45 YQHFIQQCTDDVRLFAFVRFTTGDAMSKRSKFALITWIGEDVSGLQRAKTGTDKTLVKEV 104
Query: 188 VASYAVDLFTSVKNEITESKLRAALEKAGGANY 286
V ++A + S + E+ E +R+ L+KAGGANY
Sbjct: 105 VQNFAKEFVISDRKELEEDFIRSELKKAGGANY 137
>sp|P34121|COAC_DICDI Coactosin (Cytoskeletal p17 protein) (Cyclic AMP-regulated protein
p16)
Length = 146
Score = 75.5 bits (184), Expect = 4e-14
Identities = 36/100 (36%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Frame = +2
Query: 8 YESLLAEFND-DERHFAFVRMITGDEMSKRAKFALITYCGANVSVMKKANLTVDKSLVKE 184
+ L E N ER +A++R+++GD+ SKR+KF I++CG V + KAN++V K+ VK+
Sbjct: 46 FAELAQEINQPSERLYAYLRVVSGDDESKRSKFVFISWCGEEVGPLAKANVSVHKASVKQ 105
Query: 185 VVASYAVDLFTSVKNEITESKLRAALEKAGGANYGSAK*T 304
V+ + V++ +V +++ E +L + K+ GA+Y K T
Sbjct: 106 VIKNIGVEVHYTVADDLNEEELMTKVRKSSGADYSGNKST 145
>sp|Q8VHQ7|SYTL4_RAT Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)
Length = 672
Score = 28.9 bits (63), Expect = 3.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 268 SWRC*LWISKINYK*FQNDYFYQNLINKFVF 360
SWRC + +I K D+FY +N+F +
Sbjct: 99 SWRCKVCSKEIELKKATGDWFYDQKVNRFAY 129
>sp|Q886P0|RRF_PSESM Ribosome recycling factor (Ribosome releasing factor) (RRF)
Length = 185
Score = 28.5 bits (62), Expect = 4.9
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +2
Query: 53 AFVRMITGDEMSKRAKFALITYCGANVSVMKKANLTVDKSLVKEVVASYAVDLFTSVKNE 232
AF R+ TG ++ Y GA+ + + AN+TV S +VVA + ++ +V
Sbjct: 23 AFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQVVA-FERNMLAAVDKA 81
Query: 233 ITESKL 250
I S L
Sbjct: 82 IQSSGL 87
>sp|Q96C24|SYTL4_HUMAN Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)
Length = 671
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 268 SWRC*LWISKINYK*FQNDYFYQNLINKFVF 360
+WRC + +I K D+FY +N+F +
Sbjct: 99 TWRCKVCAKEIELKKATGDWFYDQKVNRFAY 129
>sp|P36124|SET3_YEAST SET domain protein 3
Length = 751
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 77 DEMSKRAKFALITYCGANVSVMKKANLTVDKSLVKEVVASYAVDLFTSVK 226
D+++K KFAL +N+SV KK N T +K L+ Y T+++
Sbjct: 599 DDIAKPFKFALFAQHSSNISVPKK-NETSEKPLIITKSTDYDESHITNIE 647
>sp|Q9R0Q1|SYTL4_MOUSE Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)
Length = 673
Score = 27.7 bits (60), Expect = 8.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 268 SWRC*LWISKINYK*FQNDYFYQNLINKF 354
SWRC + +I K D+FY +N+F
Sbjct: 99 SWRCKVCSKEIELKKATGDWFYDQKVNRF 127
>sp|P09984|HLC1_ECOLI Hemolysin-activating lysine-acyltransferase hlyC (Toxin-activating
protein C, J96) (Hemolysin C)
Length = 170
Score = 27.7 bits (60), Expect = 8.4
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +2
Query: 20 LAEFNDDERHFAFVRMITGDEMSKRAKFALITYCGANVSVMKKANLTVDKSLVKEVVASY 199
+A F D+ + ++R DE+ + + T+ G V + +DK L ++ Y
Sbjct: 94 IAPFGDNGALYKYMRKKFPDELFRAIRVDPKTHVG---KVSEFHGGKIDKQLANKIFKQY 150
Query: 200 AVDLFTSVKNE 232
+L T VKN+
Sbjct: 151 HHELITEVKNK 161
>sp|Q20060|SMC4_CAEEL Structural maintenance of chromosome 4 (Protein smc-4)
Length = 1549
Score = 27.7 bits (60), Expect = 8.4
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +2
Query: 77 DEMSKRAKFALITYCGANVSVMKKANLTVDKSLVKEVVASYAVDLFTSVKNEITESKLR 253
D+ + F I + V+K + T+ ++ + +SYA+D + KNE+ E++LR
Sbjct: 163 DKCTVTIHFQRIVDIPGHYEVVKDSEFTISRTAFQNNSSSYAIDGRPATKNEV-EARLR 220
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,499,863
Number of Sequences: 369166
Number of extensions: 421132
Number of successful extensions: 1213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 68,354,980
effective HSP length: 95
effective length of database: 50,805,155
effective search space used: 1676570115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)