Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_C08
(779 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic... 35 0.30
sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic... 35 0.30
sp|P43883|ADFP_MOUSE Adipophilin (Adipose differentiation-r... 33 0.87
sp|P19269|AMY1_DEBOC Alpha-amylase 1 precursor (1,4-alpha-D... 32 1.5
sp|Q00496|BXE_CLOBO Botulinum neurotoxin type E precursor (... 32 1.9
sp|P55737|HSP82_ARATH Heat shock protein 81-2 (HSP81-2) 32 2.5
sp|P51818|HSP83_ARATH Heat shock protein 81-3 (HSP81-3) (HS... 32 2.5
sp|P30995|BXE_CLOBU Botulinum neurotoxin type E precursor (... 32 2.5
sp|Q8AYI2|PRGR_RANDY Progesterone receptor (PR) (dyPR) 32 2.5
sp|Q9TU19|NPHP1_CANFA Nephrocystin-1 32 2.5
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 743
Score = 34.7 bits (78), Expect = 0.30
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Frame = +3
Query: 261 KKNSGDESKTESTVMQLAQNFSNKLRVSVRAMST---VCYNHMSSGN------------K 395
KKN+ +E K +Q + L+ ++ ++ + Y + S K
Sbjct: 107 KKNNAEEMKNLVNFLQSHKKLIKALKKNIESIQNKKHLIYKNKSYNPLLLSCVKKMNMLK 166
Query: 396 ETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKV 569
E +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 167 ENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ- 224
Query: 570 EVGQNPSVEEVSQNDEDSTHNEEANLRDYLSTNDDQ 677
EV V + ++D N+E + D TNDD+
Sbjct: 225 EVNDEDDVNDEEDTNDDEDTNDEEDTNDDEDTNDDE 260
>sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 600
Score = 34.7 bits (78), Expect = 0.30
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Frame = +3
Query: 261 KKNSGDESKTESTVMQLAQNFSNKLRVSVRAMST---VCYNHMSSGN------------K 395
KKN+ +E K +Q + L+ ++ ++ + Y + S K
Sbjct: 24 KKNNAEEMKNLVNFLQSHKKLIKALKKNIESIQNKKHLIYKNKSYNPLLLSCVKKMNMLK 83
Query: 396 ETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKV 569
E +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 84 ENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ- 141
Query: 570 EVGQNPSVEEVSQNDEDSTHNEEANLRDYLSTNDDQ 677
EV V + ++D N+E + D TNDD+
Sbjct: 142 EVNDEDDVNDEEDTNDDEDTNDEEDTNDDEDTNDDE 177
>sp|P43883|ADFP_MOUSE Adipophilin (Adipose differentiation-related protein) (ADRP)
Length = 425
Score = 33.1 bits (74), Expect = 0.87
Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Frame = +3
Query: 27 SFVHRFMSKDKKAEYGAVEKKEYDILYRRALKEVNTILTFTLKNIEGLSNVLNSIYDQSV 206
S V + K K A G+VE+ + +++ ++ + G+ +NS D ++
Sbjct: 132 STVSGVVDKTKGAVTGSVERTK-------------SVVNGSINTVLGMVQFMNSGVDNAI 178
Query: 207 TKNKEWLHGYY----EEFTDEMKKNSGDESKTESTVMQLAQNFSNKL--RVSVRAMSTVC 368
TK++ + Y+ EE E KK G + + + + ++ S KL R +A+S V
Sbjct: 179 TKSEMLVDQYFPLTQEELEMEAKKVEGFDMVQKPSNYERLESLSTKLCSRAYHQALSRV- 237
Query: 369 YNHMSSGNKETLDLMFNKTEHIYSTLSKSTY------QEIRDQISIENIKWIGQNSIG 524
++ET+ + T H+ K+ + Q +D++ + ++W + SIG
Sbjct: 238 -KEAKQKSQETIS-QLHSTVHLIEFARKNMHSANQKIQGAQDKLYVSWVEW--KRSIG 291
>sp|P19269|AMY1_DEBOC Alpha-amylase 1 precursor (1,4-alpha-D-glucan glucanohydrolase 1)
Length = 512
Score = 32.3 bits (72), Expect = 1.5
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Frame = +3
Query: 228 HGYYEEFTDEMKKNSGDESKTESTVMQLAQNFSNKLRVSVRAMSTVCYNHMS-SGNKETL 404
HGY+ + DE+ N G T + QLA ++ S+ M V YNH + +G+ ++
Sbjct: 116 HGYWMKNIDELNTNFG----TADELKQLASELHSR---SMLLMVDVVYNHYAWNGDGSSV 168
Query: 405 DLM----FNKTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGL 527
D FN+ + + + Y DQ ++E+ W G + L
Sbjct: 169 DYSSFTPFNQQSYFHDYCLITNY---NDQTNVEDC-WEGDTEVSL 209
>sp|Q00496|BXE_CLOBO Botulinum neurotoxin type E precursor (BoNT/E) (Bontoxilysin E)
[Contains: Botulinum neurotoxin E light chain; Botulinum
neurotoxin E heavy chain]
Length = 1251
Score = 32.0 bits (71), Expect = 1.9
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 7/160 (4%)
Frame = +3
Query: 126 VNTILTFTLKNIEGLSN----VLNSIYDQSVTKNKEWLHGYYEEFTDEMKKNSGDESKTE 293
+ TIL FT+K+ G S+ V+ +I + ++++W Y ++ M K + +K +
Sbjct: 642 IPTILVFTIKSFLGSSDNKNKVIKAINNALKERDEKWKEVYSFIVSNWMTKINTQFNKRK 701
Query: 294 STVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFNKTEHIYSTLSKSTYQEIR 473
+ Q QN V A+ T+ + +S E + + NK + K E+
Sbjct: 702 EQMYQALQN-------QVNAIKTIIESKYNSYTLEEKNELTNKYD------IKQIENELN 748
Query: 474 DQISI--ENI-KWIGQNSIGLLSNIKESLSAKYKVEVGQN 584
++SI NI +++ ++SI L I + E +N
Sbjct: 749 QKVSIAMNNIDRFLTESSISYLMKIINEVKINKLREYDEN 788
>sp|P55737|HSP82_ARATH Heat shock protein 81-2 (HSP81-2)
Length = 699
Score = 31.6 bits (70), Expect = 2.5
Identities = 20/87 (22%), Positives = 42/87 (48%)
Frame = +3
Query: 72 GAVEKKEYDILYRRALKEVNTILTFTLKNIEGLSNVLNSIYDQSVTKNKEWLHGYYEEFT 251
G V+ ++ + R + N IL KN+ + L ++ + +NKE + +YE F+
Sbjct: 358 GIVDSEDLPLNISRETLQQNKILKVIRKNL--VKKCLELFFE--IAENKEDYNKFYEAFS 413
Query: 252 DEMKKNSGDESKTESTVMQLAQNFSNK 332
+K ++S+ + + +L + S K
Sbjct: 414 KNLKLGIHEDSQNRTKIAELLRYHSTK 440
>sp|P51818|HSP83_ARATH Heat shock protein 81-3 (HSP81-3) (HSP81.2)
Length = 699
Score = 31.6 bits (70), Expect = 2.5
Identities = 20/87 (22%), Positives = 42/87 (48%)
Frame = +3
Query: 72 GAVEKKEYDILYRRALKEVNTILTFTLKNIEGLSNVLNSIYDQSVTKNKEWLHGYYEEFT 251
G V+ ++ + R + N IL KN+ + L ++ + +NKE + +YE F+
Sbjct: 358 GIVDSEDLPLNISRETLQQNKILKVIRKNL--VKKCLELFFE--IAENKEDYNKFYEAFS 413
Query: 252 DEMKKNSGDESKTESTVMQLAQNFSNK 332
+K ++S+ + + +L + S K
Sbjct: 414 KNLKLGIHEDSQNRTKIAELLRYHSTK 440
>sp|P30995|BXE_CLOBU Botulinum neurotoxin type E precursor (BoNT/E) (Bontoxilysin E)
[Contains: Botulinum neurotoxin E light chain; Botulinum
neurotoxin E heavy chain]
Length = 1251
Score = 31.6 bits (70), Expect = 2.5
Identities = 35/158 (22%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Frame = +3
Query: 126 VNTILTFTLKNIEGLSN----VLNSIYDQSVTKNKEWLHGYYEEFTDEMKKNSGDESKTE 293
+ TIL FT+K+ G S+ V+ +I + ++++W Y ++ M K + +K +
Sbjct: 642 IPTILVFTIKSFLGSSDNKNKVIKAINNALKERDEKWKEVYSFIVSNWMTKINTQFNKRK 701
Query: 294 STVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFNKTEHIYSTLSKSTYQEIR 473
+ Q QN N L+ + + YN + K L ++ E I + L++
Sbjct: 702 EQMYQALQNQVNALKAIIESK----YNSYTLEEKNELTNKYD-IEQIENELNQKV----- 751
Query: 474 DQISIENI-KWIGQNSIGLLSNIKESLSAKYKVEVGQN 584
I++ NI +++ ++SI L + + E +N
Sbjct: 752 -SIAMNNIDRFLTESSISYLMKLINEVKINKLREYDEN 788
>sp|Q8AYI2|PRGR_RANDY Progesterone receptor (PR) (dyPR)
Length = 711
Score = 31.6 bits (70), Expect = 2.5
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 346 SEPCQPCAIITCLRETRKRWILCSIKPSISTPPYQNQHI 462
++P P A++ L + +R +LC +K S S P ++N HI
Sbjct: 484 TKPETPSALLCSLNQLCERQLLCVVKWSKSLPGFRNMHI 522
>sp|Q9TU19|NPHP1_CANFA Nephrocystin-1
Length = 565
Score = 31.6 bits (70), Expect = 2.5
Identities = 30/125 (24%), Positives = 49/125 (39%)
Frame = +3
Query: 240 EEFTDEMKKNSGDESKTESTVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFN 419
EE +E ++ G+E ++E + +N S+ S ++ + +G DL F
Sbjct: 8 EEEEEESEEGGGEEEESEEEEEEKQENESHHQATSKEYIAVGDFTAQQAG-----DLTFK 62
Query: 420 KTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKVEVGQNPSVEE 599
K E + K WI +N+ G I + Y E GQ+ S EE
Sbjct: 63 KREILLIIEKKPDGW------------WIAKNAKGNKGLIPRTYVEPYNKEEGQDTSEEE 110
Query: 600 VSQND 614
S+ D
Sbjct: 111 DSEED 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,331,502
Number of Sequences: 369166
Number of extensions: 1595735
Number of successful extensions: 5051
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5045
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7308943600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)