Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_C04
(828 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 262 7e-70
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 258 1e-68
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 257 2e-68
sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathe... 255 1e-67
sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Catheps... 251 2e-66
sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted ... 244 3e-64
sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathe... 243 4e-64
sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted pr... 243 4e-64
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 240 4e-63
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 239 7e-63
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 262 bits (670), Expect = 7e-70
Identities = 140/280 (50%), Positives = 178/280 (63%), Gaps = 6/280 (2%)
Frame = +2
Query: 5 LSLVVVAI-----TAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYI 169
LSLV+ A +AVP KF N L+ +W +K T R Y + RR +WE+N+K I
Sbjct: 3 LSLVLAAFCLGIASAVP-KFDQN--LDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMI 59
Query: 170 QKHNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPAS 349
+ HN EY GKH +++ +N F DMTNEEF+ + +G + + +G + P + LP S
Sbjct: 60 ELHNGEYSQGKHGFTMAMNAFGDMTNEEFR-QMMGCFRNQKFRKGKVFREPLFLD-LPKS 117
Query: 350 VDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXX 529
VDWR+KGYVTPVKNQ+QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS
Sbjct: 118 VDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQG 177
Query: 530 XXXXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLA 706
M AF+Y+K+ G++SE YPY A D CK P V TGFT + E L
Sbjct: 178 CNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALM 237
Query: 707 NAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDH 826
AVATVGP+SVA+DAGH+SFQ YKSGIY E CS+ LDH
Sbjct: 238 KAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDH 277
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 258 bits (660), Expect = 1e-68
Identities = 137/276 (49%), Positives = 170/276 (61%), Gaps = 2/276 (0%)
Frame = +2
Query: 5 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 184
L+ + + I + KF + LN +W +K T R Y + RR +WE+N+K I+ HN
Sbjct: 7 LTALCLGIASAAPKF--DQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIELHNR 64
Query: 185 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 364
EY GKH +++ +N F DMTNEEF+ G K +G + P +P SVDWR+
Sbjct: 65 EYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKMFQEPL-FAEIPKSVDWRE 122
Query: 365 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 544
KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS L
Sbjct: 123 KGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNGGL 182
Query: 545 MDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLANAVA 718
MDNAFRY+KD G++SE YPY D TC P TGF D+ Q E L AVA
Sbjct: 183 MDNAFRYVKDNGGLDSEESYPYLGRDTETCNYKPECSAANDTGFVDL-PQREKALMKAVA 241
Query: 719 TVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDH 826
T+GP+SVAIDAGH SFQ YKSGIY + CS+ LDH
Sbjct: 242 TLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDH 277
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 257 bits (657), Expect = 2e-68
Identities = 135/275 (49%), Positives = 167/275 (60%), Gaps = 1/275 (0%)
Frame = +2
Query: 5 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 184
L L + + + L +W +K R Y + RR +WE+N+K I+ HN
Sbjct: 5 LILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQ 64
Query: 185 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 364
EY GKH++++ +N F DMT+EEF+ G KP +G + P P SVDWR+
Sbjct: 65 EYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR-KGKVFQEPLFYEA-PRSVDWRE 122
Query: 365 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 544
KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK RLIS SEQ LVDCS L
Sbjct: 123 KGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGL 182
Query: 545 MDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAVAT 721
MD AF+Y++D G++SE YPY AT+ +CK NP V TGF DI Q E L AVAT
Sbjct: 183 MDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQ-EKALMKAVAT 241
Query: 722 VGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDH 826
VGP+SVAIDAGH SF YK GIY E CS+ +DH
Sbjct: 242 VGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDH 276
>sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 255 bits (651), Expect = 1e-67
Identities = 138/276 (50%), Positives = 167/276 (60%), Gaps = 2/276 (0%)
Frame = +2
Query: 5 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 184
L+++ + + + K N L+ W +K T R Y + RR +WE+N K I HN
Sbjct: 7 LTVLCLGVASAAPKLDPN--LDAHWHQWKATHRRLYGMNEEEWRRAVWEKNKKIIDLHNQ 64
Query: 185 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 364
EY GKH + + +N F DMTNEEF+ G K +G + P + V P SVDW +
Sbjct: 65 EYSEGKHAFRMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKLFHEPLLVDV-PKSVDWTK 122
Query: 365 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 544
KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS L
Sbjct: 123 KGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNGGL 182
Query: 545 MDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLANAVA 718
MDNAF+YIKD G++SE YPY ATD +C P TGF DI Q E L AVA
Sbjct: 183 MDNAFQYIKDNGGLDSEESYPYLATDTNSCNYKPECSAANDTGFVDI-PQREKALMKAVA 241
Query: 719 TVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDH 826
TVGP+SVAIDAGH SFQ YKSGIY + CS LDH
Sbjct: 242 TVGPISVAIDAGHTSFQFYKSGIYYDPDCSCKDLDH 277
>sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 251 bits (641), Expect = 2e-66
Identities = 135/276 (48%), Positives = 170/276 (61%), Gaps = 2/276 (0%)
Frame = +2
Query: 5 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 184
L+ + + I + K N L+ +W +K T GR Y + RR +WE+N+K I+ HN
Sbjct: 7 LTALCLGIASAAPKLDQN--LDADWYKWKATHGRLYGMNEEGWRRAVWEKNMKMIELHNQ 64
Query: 185 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 364
EY GKH +S+ +N F DMTNEEF+ G K +G + + V P SVDWR+
Sbjct: 65 EYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKVFHESLVLEV-PKSVDWRE 122
Query: 365 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 544
KGYVT VKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS L
Sbjct: 123 KGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGL 182
Query: 545 MDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLANAVA 718
MDNAF+Y+KD G+++E YPY + +C P TGF DI Q E L AVA
Sbjct: 183 MDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECSAANDTGFVDI-PQREKALMKAVA 241
Query: 719 TVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDH 826
TVGP+SVAIDAGH+SFQ YKSGIY + CS+ LDH
Sbjct: 242 TVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDH 277
>sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted protein) (MEP) (p39 cysteine
proteinase) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 244 bits (622), Expect = 3e-64
Identities = 133/276 (48%), Positives = 168/276 (60%), Gaps = 1/276 (0%)
Frame = +2
Query: 2 ILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHN 181
+L+++ + KF + + EW +K+T R Y + RR IWE+N++ IQ HN
Sbjct: 6 LLAVLCLGTALATPKF--DQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQLHN 63
Query: 182 LEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWR 361
EY G+H +S+ +N F DMTNEEF+ G K +G + P + + P SVDWR
Sbjct: 64 GEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHK-KGRLFQEPLMLKI-PKSVDWR 121
Query: 362 QKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXX 541
+KG VTPVKNQ QCGSCW+FSA+G LEGQ F K +LIS SEQ LVDCS
Sbjct: 122 EKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNGG 181
Query: 542 LMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAVA 718
LMD AF+YIK+ G++SE YPY A DG+CK V TGF DI Q E L AVA
Sbjct: 182 LMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTGFVDI-PQQEKALMKAVA 240
Query: 719 TVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDH 826
TVGP+SVA+DA H S Q Y SGIY E +CS+ LDH
Sbjct: 241 TVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDH 276
>sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 339
Score = 243 bits (621), Expect = 4e-64
Identities = 132/281 (46%), Positives = 171/281 (60%), Gaps = 9/281 (3%)
Frame = +2
Query: 11 LVVVAITAVPQKFSVNSELNEEWETYKTTFGRKY-DELTDITRRLIWEQNLKYIQKHNLE 187
+ ++A+ A+ Q S + EEW TYK + Y +E+ + R I+ +N I KHN
Sbjct: 6 VALLALVALTQAISPLDLIKEEWHTYKLQHRKNYANEVEERFRMKIFNENRHKIAKHNQL 65
Query: 188 YDLGKHTYSLGLNQFADMTNEEFKAKYLG-------IMKTKPTLEGSTYMAPENIGVLPA 346
+ GK +Y LGLN++ADM + EFK G +M+ + L G+TY+ P ++ V P
Sbjct: 66 FAQGKVSYKLGLNKYADMLHHEFKETMNGYNHTLRQLMRERTGLVGATYIPPAHVTV-PK 124
Query: 347 SVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXX 526
SVDWR+ G VT VK+Q CGSCW+FS+TG+LEGQ+FRK L+S SEQ LVDCS
Sbjct: 125 SVDWREHGAVTGVKDQGHCGSCWAFSSTGALEGQHFRKAGVLVSLSEQNLVDCSTKYGNN 184
Query: 527 XXXXXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDL 703
LMDNAFRYIKD GI++E YPY D +C N + I TGF DI +E +
Sbjct: 185 GCNGGLMDNAFRYIKDNGGIDTEKSYPYEGIDDSCHFNKATIGATDTGFVDIPEGDEEKM 244
Query: 704 ANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDH 826
AVAT+GPVSVAIDA H SFQLY G+YNE C LDH
Sbjct: 245 KKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLDH 285
>sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted protein) (MEP) (Cyclic
protein 2) (CP-2) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 243 bits (621), Expect = 4e-64
Identities = 131/276 (47%), Positives = 168/276 (60%), Gaps = 1/276 (0%)
Frame = +2
Query: 2 ILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHN 181
+L+++ + KF + N +W +K+T R Y + RR +WE+N++ IQ HN
Sbjct: 6 LLAVLCLGTALATPKF--DQTFNAQWHQWKSTHRRLYGTNEEEWRRAVWEKNMRMIQLHN 63
Query: 182 LEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWR 361
EY GKH +++ +N F DMTNEEF+ G K +G + P + + P +VDWR
Sbjct: 64 GEYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYRHQKHK-KGRLFQEPLMLQI-PKTVDWR 121
Query: 362 QKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXX 541
+KG VTPVKNQ QCGSCW+FSA+G LEGQ F K +LIS SEQ LVDCS
Sbjct: 122 EKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCNGG 181
Query: 542 LMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAVA 718
LMD AF+YIK+ G++SE YPY A DG+CK V TGF DI Q E L AVA
Sbjct: 182 LMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEYAVANDTGFVDI-PQQEKALMKAVA 240
Query: 719 TVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDH 826
TVGP+SVA+DA H S Q Y SGIY E +CS+ LDH
Sbjct: 241 TVGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDH 276
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 240 bits (612), Expect = 4e-63
Identities = 119/274 (43%), Positives = 167/274 (60%)
Frame = +2
Query: 5 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 184
+ L ++A+ V V ++ W +K + ++Y+ D RR IWE+N+K+IQ+HNL
Sbjct: 1 MRLFILAVLTV----GVLGSNDDLWHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNL 56
Query: 185 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 364
+DLG TY+LGLNQF DMT EEFKAKYL M + N +P +DWR+
Sbjct: 57 RHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRAVPDKIDWRE 116
Query: 365 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 544
GYVT VK+Q CGSCW+FS TG++EGQY + ISFSEQQLVDCS L
Sbjct: 117 SGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGL 176
Query: 545 MDNAFRYIKDQGIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAVATV 724
M+NA++Y+K G+E+E YPYTA +G C+ N V K TG+ + S +E +L N V
Sbjct: 177 MENAYQYLKQFGLETESSYPYTAVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGAR 236
Query: 725 GPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDH 826
P +VA+D + F +Y+SGIY ++CS +++H
Sbjct: 237 RPAAVAVDV-ESDFMMYRSGIYQSQTCSPLRVNH 269
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 239 bits (610), Expect = 7e-63
Identities = 129/278 (46%), Positives = 169/278 (60%), Gaps = 3/278 (1%)
Frame = +2
Query: 2 ILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTD-ITRRLIWEQNLKYIQKH 178
+L L VV+ P++ L+ WE +K T ++Y+ D I+RRLIWE+NLKYI H
Sbjct: 6 VLLLPVVSFALYPEEI-----LDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIH 60
Query: 179 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGI-MKTKPTLEGSTYMAPENIGVLPASVD 355
NLE LG HTY L +N DMT+EE K G+ + + T PE G P SVD
Sbjct: 61 NLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVD 120
Query: 356 WRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXX 535
+R+KGYVTPVKNQ QCGSCW+FS+ G+LEGQ +K +L++ S Q LVDC
Sbjct: 121 YRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCG 178
Query: 536 XXLMDNAFRYI-KDQGIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANA 712
M NAF+Y+ K++GI+SE YPY + +C NP+ KC G+ +I NE L A
Sbjct: 179 GGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRA 238
Query: 713 VATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDH 826
VA VGPVSVAIDA SFQ Y G+Y +ESC++ L+H
Sbjct: 239 VARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNH 276
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,870,030
Number of Sequences: 369166
Number of extensions: 1703639
Number of successful extensions: 4988
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4625
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)