Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_B24
(563 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UNZ2|NSF1C_HUMAN NSFL1 cofactor p47 (p97 cofactor p47) 137 1e-32
sp|O35987|NSF1C_RAT NSFL1 cofactor p47 (p97 cofactor p47) (... 132 5e-31
sp|Q9CZ44|NSF1C_MOUSE NSFL1 cofactor p47 (p97 cofactor p47) 132 5e-31
sp|P68543|UBXD4_HUMAN UBX domain-containing protein 4 96 5e-20
sp|Q99KJ0|UBXD4_MOUSE UBX domain-containing protein 4 96 8e-20
sp|P34223|UBX1_YEAST UBX domain protein 1 (Suppressor of hi... 90 4e-18
sp|P73245|Y1917_SYNY3 Oxygen-independent coproporphyrinogen... 33 0.37
sp|P32896|PDC2_YEAST PDC2 protein 32 1.4
sp|P10335|LIP_STAAU Lipase precursor (Glycerol ester hydrol... 31 1.9
sp|Q10355|YDB2_SCHPO Hypothetical RNA-binding protein C22E1... 31 2.4
>sp|Q9UNZ2|NSF1C_HUMAN NSFL1 cofactor p47 (p97 cofactor p47)
Length = 370
Score = 137 bits (346), Expect = 1e-32
Identities = 72/171 (42%), Positives = 107/171 (62%), Gaps = 3/171 (1%)
Frame = +3
Query: 3 SLTEPNDIAFLRSLSTGQIPTELLQQHKYAKIDLNMEDHSSDEYKAPPKPKVVPFQGTGK 182
S +P++ FL S+ G++P EL + +++L+MEDH +++ PK F G G+
Sbjct: 200 SYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDF-VKPKGAFKAFTGEGQ 258
Query: 183 MLGSPVPKIICEPAKTSQATSSV---SPINVDENKPVTQIQIRLADNSRLVVRLNHNHTV 353
LGS P+++ + QA + S I +DE++P T IQIRLAD RLV + NH+H +
Sbjct: 259 KLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRI 318
Query: 354 GDLKKHIISQHSQYQSVNFNLMTTFPNKILSDDSITIQEANLLNAVIVQRL 506
D++ I+ + +F LMTTFPNK L+D+S T++EANLLNAVIVQRL
Sbjct: 319 SDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRL 369
>sp|O35987|NSF1C_RAT NSFL1 cofactor p47 (p97 cofactor p47) (XY body-associated protein
XY40)
Length = 370
Score = 132 bits (333), Expect = 5e-31
Identities = 70/171 (40%), Positives = 106/171 (61%), Gaps = 3/171 (1%)
Frame = +3
Query: 3 SLTEPNDIAFLRSLSTGQIPTELLQQHKYAKIDLNMEDHSSDEYKAPPKPKVVPFQGTGK 182
S +P++ FL S+ G++P EL + +++L+MEDH +++ PK F G G+
Sbjct: 200 SYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDF-VKPKGAFKAFTGEGQ 258
Query: 183 MLGSPVPKIICEPAKTSQATSSV---SPINVDENKPVTQIQIRLADNSRLVVRLNHNHTV 353
LGS P+++ + QA + S I ++E +P T IQIRLAD RLV + NH+H +
Sbjct: 259 KLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRI 318
Query: 354 GDLKKHIISQHSQYQSVNFNLMTTFPNKILSDDSITIQEANLLNAVIVQRL 506
D++ I+ + +F LMTTFPNK L+D++ T++EANLLNAVIVQRL
Sbjct: 319 SDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQRL 369
>sp|Q9CZ44|NSF1C_MOUSE NSFL1 cofactor p47 (p97 cofactor p47)
Length = 370
Score = 132 bits (333), Expect = 5e-31
Identities = 70/171 (40%), Positives = 106/171 (61%), Gaps = 3/171 (1%)
Frame = +3
Query: 3 SLTEPNDIAFLRSLSTGQIPTELLQQHKYAKIDLNMEDHSSDEYKAPPKPKVVPFQGTGK 182
S +P++ FL S+ G++P EL + +++L+MEDH +++ PK F G G+
Sbjct: 200 SYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDF-VKPKGAFKAFTGEGQ 258
Query: 183 MLGSPVPKIICEPAKTSQATSSV---SPINVDENKPVTQIQIRLADNSRLVVRLNHNHTV 353
LGS P+++ + QA + S I ++E +P T IQIRLAD RLV + NH+H +
Sbjct: 259 KLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRI 318
Query: 354 GDLKKHIISQHSQYQSVNFNLMTTFPNKILSDDSITIQEANLLNAVIVQRL 506
D++ I+ + +F LMTTFPNK L+D++ T++EANLLNAVIVQRL
Sbjct: 319 SDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQRL 369
>sp|P68543|UBXD4_HUMAN UBX domain-containing protein 4
Length = 259
Score = 96.3 bits (238), Expect = 5e-20
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 1/160 (0%)
Frame = +3
Query: 30 FLRSLSTGQIPTELLQQHKYAKIDLNMEDHSSDEYKAPPKPKVVPFQGTGKMLGSPVPKI 209
FL S+ G++P+EL ++D+ +ED +E KP PF G G LGS PKI
Sbjct: 89 FLNSIKKGELPSELQGIFDKEEVDVKVED-KKNEICLSTKPVFQPFSGQGHRLGSATPKI 147
Query: 210 ICEPAKTS-QATSSVSPINVDENKPVTQIQIRLADNSRLVVRLNHNHTVGDLKKHIISQH 386
+ + + +++S + ++ +P+T IQI LA+ R+V + N H V +K I
Sbjct: 148 VSKAKNIEVENKNNLSAVPLNNLEPITNIQIWLANGKRIVQKFNITHRVSHIKDFIEKYQ 207
Query: 387 SQYQSVNFNLMTTFPNKILSDDSITIQEANLLNAVIVQRL 506
+S F+L T P L D+++T++EA+L NAVI+QRL
Sbjct: 208 GSQRSPPFSLATALPVLRLLDETLTLEEADLQNAVIIQRL 247
>sp|Q99KJ0|UBXD4_MOUSE UBX domain-containing protein 4
Length = 258
Score = 95.5 bits (236), Expect = 8e-20
Identities = 58/161 (36%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Frame = +3
Query: 30 FLRSLSTGQIPTELLQQHKYAKIDLNMEDHSSDEYKAPPKPKVVPFQGTGKMLGSPVPKI 209
FL S+ G++P+EL ++D+ +ED +E KP PF G G LGS P+I
Sbjct: 90 FLNSIKKGELPSELWGIFDKEEVDVKVED-KKNEVCMSTKPVFQPFSGQGHRLGSATPRI 148
Query: 210 ICEPAKTSQAT--SSVSPINVDENKPVTQIQIRLADNSRLVVRLNHNHTVGDLKKHIISQ 383
+ + AK+ + S++S ++++ +P+T+IQI LA+ R V R N +H V +K I
Sbjct: 149 VSK-AKSVEVDNKSTLSAVSLNNLEPITRIQIWLANGERTVQRFNVSHRVSHIKDFIEKY 207
Query: 384 HSQYQSVNFNLMTTFPNKILSDDSITIQEANLLNAVIVQRL 506
+S F L T P D+++T++EA+L NAVI+QRL
Sbjct: 208 QGSQRSPPFALATALPFLRFLDETLTLEEADLKNAVIIQRL 248
>sp|P34223|UBX1_YEAST UBX domain protein 1 (Suppressor of high-copy PP1 protein)
Length = 423
Score = 89.7 bits (221), Expect = 4e-18
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Frame = +3
Query: 12 EPNDIAFLRSLSTGQIPTELLQQHKYAKIDLNMEDHSSDEYKAPPKPKVVPFQGTGKMLG 191
+P + +L L+ G+ P +LL ++++N+ + YKAP + K+ F G G+ LG
Sbjct: 256 DPANSFYLSELNQGRAPLKLLDVQFGQEVEVNVYKKLDESYKAPTR-KLGGFSGQGQRLG 314
Query: 192 SPVPKIICEPAKTSQATSSVSPINVDENKPV---TQIQIRLADNSRLVVRLNHNHTVGDL 362
SP+P T + + +N+P T IQIR A+ R V+ N TV L
Sbjct: 315 SPIPGESSPAEVPKNETPAAQEQPMPDNEPKQGDTSIQIRYANGKREVLHCNSTDTVKFL 374
Query: 363 KKHIISQHSQYQSVNFNLMTTFPNKILSDDSITIQEANLLNAVIVQR 503
+H+ S + S NF L FP K +S+D T+++A+LLN+V+VQR
Sbjct: 375 YEHVTSNANTDPSRNFTLNYAFPIKPISNDETTLKDADLLNSVVVQR 421
>sp|P73245|Y1917_SYNY3 Oxygen-independent coproporphyrinogen III oxidase-like protein
sll1917
Length = 412
Score = 33.5 bits (75), Expect = 0.37
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Frame = -2
Query: 292 ICVTGLFSSTL---IGETEEVACEVLAGSQ--------IIFGTGDPNILPV 173
I VTG S TL +GE E C +AG Q + FG G P++LP+
Sbjct: 30 IAVTGFQSLTLDGWVGEYVEAVCREIAGQQHQGQPLQTVFFGGGTPSLLPI 80
>sp|P32896|PDC2_YEAST PDC2 protein
Length = 925
Score = 31.6 bits (70), Expect = 1.4
Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 12/167 (7%)
Frame = +3
Query: 12 EPNDIAFLRSL--STGQIPTELLQQHKYAKIDLNMEDHSSDEYKAPPKPKVVPFQGTGKM 185
+P D+ + L T + + + ++ LN H+S P + P
Sbjct: 712 QPFDVPHMNGLLSDTSKSGHSVNSSNAISQNSLNNFQHNSASVAEASSPSITPSPVAINS 771
Query: 186 LGSPVPKIICEPAKTSQATSSVSPINVDENKPVTQIQIRLADNSRLVVRLNHNHTVGDLK 365
G+P II P ++ + SS S + E S L +N ++ +
Sbjct: 772 TGAPARSIISAPIDSNSSASSPSALEHLEGAVSGMSPSSTTILSNLQTNINIAKSLSTIM 831
Query: 366 KHIISQH-----SQYQSVNFNLMTTF-----PNKILSDDSITIQEAN 476
KH S +NFN +T K L+ +SI I N
Sbjct: 832 KHAESNEISLTKETINELNFNYLTLLKRIKKTRKQLNSESIKINSKN 878
>sp|P10335|LIP_STAAU Lipase precursor (Glycerol ester hydrolase)
Length = 690
Score = 31.2 bits (69), Expect = 1.9
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Frame = +3
Query: 144 PKPKVVPFQGTGKMLGSPVP---KIICEPAKTSQATSSVSPINVDENKPVTQIQIRLADN 314
P KV+P + P K + K AT+ P D ++P QI D+
Sbjct: 172 PAQKVIPNHDKAAPTSTTPPSNDKTAPKSTKAQDATTDKHPNQQDTHQPAHQIIDAKQDD 231
Query: 315 SRLVVRLNHNHTVGDLKKHIISQHSQYQSVNFNLMTTFPNKILSDDSI 458
+ V + VGDL KHI Q+S + + N NK L D++
Sbjct: 232 T--VRQSEQKPQVGDLSKHIDGQNSPEKPTDKNT----DNKQLIKDAL 273
>sp|Q10355|YDB2_SCHPO Hypothetical RNA-binding protein C22E12.02 in chromosome I
Length = 219
Score = 30.8 bits (68), Expect = 2.4
Identities = 27/95 (28%), Positives = 45/95 (47%)
Frame = +3
Query: 177 GKMLGSPVPKIICEPAKTSQATSSVSPINVDENKPVTQIQIRLADNSRLVVRLNHNHTVG 356
GK +GS P K S+ATS V P V+E ++I+ NS ++H + V
Sbjct: 92 GKYIGS-------RPVKLSRATSDVKPNEVNEKTIDSKIR-----NSLYSRTIHHGNRV- 138
Query: 357 DLKKHIISQHSQYQSVNFNLMTTFPNKILSDDSIT 461
+K I ++H + S + + +++S SIT
Sbjct: 139 --QKKIKNKHGKNSSKSSRAAQSAAAELISSSSIT 171
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,032,197
Number of Sequences: 369166
Number of extensions: 1232909
Number of successful extensions: 3540
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3530
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)