Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_B18
(840 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q44643|ACPA_BACAN Capsule synthesis positive regulator acpA 33 0.75
sp|Q9ESL4|MLTK_MOUSE Mitogen-activated protein kinase kinas... 33 0.98
sp|Q9NYL2|MLTK_HUMAN Mitogen-activated protein kinase kinas... 33 1.3
sp|P43243|MATR3_HUMAN Matrin-3 32 2.2
sp|Q16760|DGKD_HUMAN Diacylglycerol kinase, delta (Diglycer... 32 2.2
sp|Q8K310|MATR3_MOUSE Matrin-3 31 3.7
sp|P08411|POLN_SFV Nonstructural polyprotein (Polyprotein n... 30 6.4
sp|P39969|BOI2_YEAST Protein BOI2 (Protein BEB1) 30 6.4
sp|P43244|MATR3_RAT Matrin-3 30 6.4
sp|Q895N4|Y1238_CLOTE Hypothetical UPF0348 protein CTC01238 30 8.3
>sp|Q44643|ACPA_BACAN Capsule synthesis positive regulator acpA
Length = 483
Score = 33.5 bits (75), Expect = 0.75
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 473 QNRNISQSNRIVILSEPSNTEIDKKSSVLKRLGKSLE---KYEKLTNGNADNCDEIE 634
+ NI++ ++I E + E KS + KR G L+ + K+ NGN DN D I+
Sbjct: 389 KQHNINRKKVLLITGEGKSWEEYMKSRINKRYGDQLKFVGGHAKILNGNTDNIDNID 445
>sp|Q9ESL4|MLTK_MOUSE Mitogen-activated protein kinase kinase kinase MLT (MLK-like
mitogen-activated protein triple kinase) (Leucine zipper
and sterile alpha motif kinase ZAK) (Sterile-alpha motif
and leucine zipper containing kinase AZK) (Mixed lineage
kinase-related kinase MRK)
Length = 802
Score = 33.1 bits (74), Expect = 0.98
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 35 EDVY-WECFFNNAGISGPASKDYASIFVKNKISKPILVHINDSHLKSMGIEAIGDIIRIL 211
+DVY W G S YAS+F +N I+ L+ + + LK MGI + G II
Sbjct: 342 DDVYFWVQQLVRKGESSVEMSGYASLFKENNITGKRLLLLEEEDLKDMGIVSKGHIIHFK 401
Query: 212 KYIK 223
I+
Sbjct: 402 SAIE 405
>sp|Q9NYL2|MLTK_HUMAN Mitogen-activated protein kinase kinase kinase MLT (MLK-like
mitogen-activated protein triple kinase) (Leucine zipper
and sterile alpha motif kinase ZAK) (Sterile-alpha motif
and leucine zipper containing kinase AZK) (Mixed lineage
kinase-related kinase MRK) (Cervical cancer suppressor
gene-4 protein)
Length = 800
Score = 32.7 bits (73), Expect = 1.3
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 35 EDVY-WECFFNNAGISGPASKDYASIFVKNKISKPILVHINDSHLKSMGIEAIGDIIRIL 211
+DVY W G S YAS+F +N I+ L+ + + LK MGI + G II
Sbjct: 342 DDVYCWVQQLVRKGDSSAEMSVYASLFKENNITGKRLLLLEEEDLKDMGIVSKGHIIHFK 401
Query: 212 KYIK 223
I+
Sbjct: 402 SAIE 405
>sp|P43243|MATR3_HUMAN Matrin-3
Length = 847
Score = 32.0 bits (71), Expect = 2.2
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 518 EPSNTEIDKKSSVLKRLGKSLEKYEKLTNGNADNCDEIEKSVPENSIKNTENT 676
EPS+ + K S K L+K +K+ + D+ ++ EN IKN ENT
Sbjct: 694 EPSDKAVKKDGSASAAAKKKLKKVDKI-----EELDQENEAALENGIKNEENT 741
>sp|Q16760|DGKD_HUMAN Diacylglycerol kinase, delta (Diglyceride kinase) (DGK-delta) (DAG
kinase delta) (130 kDa diacylglycerol kinase)
Length = 1214
Score = 32.0 bits (71), Expect = 2.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 95 DYASIFVKNKISKPILVHINDSHLKSMGIEAIGDIIRILKYIKDFPQT 238
+Y IF ++ I L+H+ LK +G+ +G + RIL IK+ ++
Sbjct: 1161 EYKDIFTRHDIRGSELLHLERRDLKDLGVTKVGHMKRILCGIKELSRS 1208
>sp|Q8K310|MATR3_MOUSE Matrin-3
Length = 846
Score = 31.2 bits (69), Expect = 3.7
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 518 EPSNTEIDKKSSVLKRLGKSLEKYEKLTNGNADNCDEIEKSVPENSIKNTENT 676
EPS+ + K S K L+K +K+ + D+ ++ EN IKN ENT
Sbjct: 693 EPSDKAVKKDPSASATSKKKLKKVDKI-----EELDQENEAALENGIKNEENT 740
>sp|P08411|POLN_SFV Nonstructural polyprotein (Polyprotein nsP1234) [Contains:
Nonstructural protein NSP1; Nonstructural protein NSP2;
Nonstructural protein NSP3; Nonstructural protein NSP4]
Length = 2431
Score = 30.4 bits (67), Expect = 6.4
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 545 KSSVLKRLGKSLEKYEKLTNGNADNCDEIEKSVPENSIKNTENTN 679
KS+++K L + K++ +T+G +NC EI V ++ K T N
Sbjct: 729 KSAIIKSL---VTKHDLVTSGKKENCQEIVNDVKKHRGKGTSREN 770
>sp|P39969|BOI2_YEAST Protein BOI2 (Protein BEB1)
Length = 1040
Score = 30.4 bits (67), Expect = 6.4
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 101 ASIFVKNKISKPILVHINDSHLKSMGIEAIGDIIRILKYIK 223
AS F K+KIS IL+ + HLK + I + G I K I+
Sbjct: 285 ASRFQKHKISGKILLELELVHLKELDINSFGTRFEIFKEIE 325
>sp|P43244|MATR3_RAT Matrin-3
Length = 845
Score = 30.4 bits (67), Expect = 6.4
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 518 EPSNTEIDKKSSVLKRLGKSLEKYEKLTNGNADNCDEIEKSVPENSIKNTENT 676
EPS+ + K +S + K L+K +K+ + D+ ++ EN IKN ENT
Sbjct: 694 EPSDKAVKKDASATSK--KKLKKVDKI-----EELDQENEAALENGIKNEENT 739
>sp|Q895N4|Y1238_CLOTE Hypothetical UPF0348 protein CTC01238
Length = 403
Score = 30.0 bits (66), Expect = 8.3
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 605 GNADNCDEIEKSVPE---NSIKNTENTNC 682
GN +N D + KSVPE N +KN +N C
Sbjct: 218 GNNENLDNLVKSVPETVLNMLKNFQNEQC 246
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,033,557
Number of Sequences: 369166
Number of extensions: 1604221
Number of successful extensions: 4465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4464
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)