Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_B13
(371 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9TT15|VDAC1_RABIT Voltage-dependent anion-selective cha... 88 5e-18
sp|P21796|VDAC1_HUMAN Voltage-dependent anion-selective cha... 88 5e-18
sp|P45879|VDAC1_BOVIN Voltage-dependent anion-selective cha... 88 5e-18
sp|Q9Z2L0|VDAC1_RAT Voltage-dependent anion-selective chann... 88 7e-18
sp|Q94920|VDAC_DROME Voltage-dependent anion-selective chan... 88 7e-18
sp|Q60932|VDAC1_MOUSE Voltage-dependent anion-selective cha... 88 7e-18
sp|Q9MZ13|VDAC3_BOVIN Voltage-dependent anion-selective cha... 84 1e-16
sp|Q9Y277|VDAC3_HUMAN Voltage-dependent anion-selective cha... 84 1e-16
sp|Q9TT13|VDAC3_RABIT Voltage-dependent anion-selective cha... 84 1e-16
sp|P82013|VDAC2_MELGA Voltage-dependent anion-selective cha... 84 1e-16
>sp|Q9TT15|VDAC1_RABIT Voltage-dependent anion-selective channel protein 1 (VDAC-1) (Outer
mitochondrial membrane protein porin 1)
Length = 283
Score = 88.2 bits (217), Expect = 5e-18
Identities = 38/110 (34%), Positives = 62/110 (56%)
Frame = +1
Query: 4 GYHKPDLSLIGTIINKNDIEALIFQKINPSVDIGVQIKWNWNSRNTEFGVVGKYAFDNDS 183
GY + L + + + I+QK+N ++ V + W + NT FG+ KY D D+
Sbjct: 172 GYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDA 231
Query: 184 FFKGKIDNKSIIGLAYGFRARDNVNITLNAEIDGKDLEKGGHRFGLGLSY 333
F K++N S+IGL Y + + +TL+A +DGK++ GGH+ GLGL +
Sbjct: 232 CFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEF 281
>sp|P21796|VDAC1_HUMAN Voltage-dependent anion-selective channel protein 1 (VDAC-1)
(hVDAC1) (Outer mitochondrial membrane protein porin 1)
(Plasmalemmal porin) (Porin 31HL) (Porin 31HM)
Length = 283
Score = 88.2 bits (217), Expect = 5e-18
Identities = 38/110 (34%), Positives = 62/110 (56%)
Frame = +1
Query: 4 GYHKPDLSLIGTIINKNDIEALIFQKINPSVDIGVQIKWNWNSRNTEFGVVGKYAFDNDS 183
GY + L + + + I+QK+N ++ V + W + NT FG+ KY D D+
Sbjct: 172 GYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDA 231
Query: 184 FFKGKIDNKSIIGLAYGFRARDNVNITLNAEIDGKDLEKGGHRFGLGLSY 333
F K++N S+IGL Y + + +TL+A +DGK++ GGH+ GLGL +
Sbjct: 232 CFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEF 281
>sp|P45879|VDAC1_BOVIN Voltage-dependent anion-selective channel protein 1 (VDAC-1)
(Plasmalemmal porin) (Brain-derived voltage-dependent
anion channel 1) (BR1-VDAC)
Length = 283
Score = 88.2 bits (217), Expect = 5e-18
Identities = 38/110 (34%), Positives = 62/110 (56%)
Frame = +1
Query: 4 GYHKPDLSLIGTIINKNDIEALIFQKINPSVDIGVQIKWNWNSRNTEFGVVGKYAFDNDS 183
GY + L + + + I+QK+N ++ V + W + NT FG+ KY D D+
Sbjct: 172 GYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDA 231
Query: 184 FFKGKIDNKSIIGLAYGFRARDNVNITLNAEIDGKDLEKGGHRFGLGLSY 333
F K++N S+IGL Y + + +TL+A +DGK++ GGH+ GLGL +
Sbjct: 232 CFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEF 281
>sp|Q9Z2L0|VDAC1_RAT Voltage-dependent anion-selective channel protein 1 (VDAC-1)
(rVDAC1) (Outer mitochondrial membrane protein porin 1)
Length = 283
Score = 87.8 bits (216), Expect = 7e-18
Identities = 38/110 (34%), Positives = 62/110 (56%)
Frame = +1
Query: 4 GYHKPDLSLIGTIINKNDIEALIFQKINPSVDIGVQIKWNWNSRNTEFGVVGKYAFDNDS 183
GY + L + + + I+QK+N ++ V + W + NT FG+ KY D D+
Sbjct: 172 GYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDA 231
Query: 184 FFKGKIDNKSIIGLAYGFRARDNVNITLNAEIDGKDLEKGGHRFGLGLSY 333
F K++N S+IGL Y + + +TL+A +DGK++ GGH+ GLGL +
Sbjct: 232 CFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEF 281
>sp|Q94920|VDAC_DROME Voltage-dependent anion-selective channel (Porin protein) (DmVDAC)
Length = 282
Score = 87.8 bits (216), Expect = 7e-18
Identities = 39/108 (36%), Positives = 63/108 (58%)
Frame = +1
Query: 4 GYHKPDLSLIGTIINKNDIEALIFQKINPSVDIGVQIKWNWNSRNTEFGVVGKYAFDNDS 183
GY D L + + + IFQ+ + +D+GVQ+ W + NT+F + KY D+D+
Sbjct: 171 GYTTKDFVLHTAVNDGQEFSGSIFQRTSDKLDVGVQLSWASGTSNTKFAIGAKYQLDDDA 230
Query: 184 FFKGKIDNKSIIGLAYGFRARDNVNITLNAEIDGKDLEKGGHRFGLGL 327
+ K++N S +GL Y + RD V +TL+ +DGK+ GGH+ G+GL
Sbjct: 231 SVRAKVNNASQVGLGYQQKLRDGVTLTLSTLVDGKNFNAGGHKIGVGL 278
>sp|Q60932|VDAC1_MOUSE Voltage-dependent anion-selective channel protein 1 (VDAC-1)
(mVDAC1) (mVDAC5) (Outer mitochondrial membrane protein
porin 1) (Plasmalemmal porin)
Length = 296
Score = 87.8 bits (216), Expect = 7e-18
Identities = 38/110 (34%), Positives = 62/110 (56%)
Frame = +1
Query: 4 GYHKPDLSLIGTIINKNDIEALIFQKINPSVDIGVQIKWNWNSRNTEFGVVGKYAFDNDS 183
GY + L + + + I+QK+N ++ V + W + NT FG+ KY D D+
Sbjct: 185 GYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDA 244
Query: 184 FFKGKIDNKSIIGLAYGFRARDNVNITLNAEIDGKDLEKGGHRFGLGLSY 333
F K++N S+IGL Y + + +TL+A +DGK++ GGH+ GLGL +
Sbjct: 245 CFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEF 294
>sp|Q9MZ13|VDAC3_BOVIN Voltage-dependent anion-selective channel protein 3 (VDAC-3)
(hVDAC3) (Outer mitochondrial membrane protein porin 3)
Length = 283
Score = 83.6 bits (205), Expect = 1e-16
Identities = 39/107 (36%), Positives = 57/107 (53%)
Frame = +1
Query: 4 GYHKPDLSLIGTIINKNDIEALIFQKINPSVDIGVQIKWNWNSRNTEFGVVGKYAFDNDS 183
GY D L + + + I+QK+N ++ + + W S NT FG+ KY D +
Sbjct: 172 GYKAADFQLHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRT 231
Query: 184 FFKGKIDNKSIIGLAYGFRARDNVNITLNAEIDGKDLEKGGHRFGLG 324
K++N S+IGL Y R V +TL+A IDGK+ GGH+ GLG
Sbjct: 232 SLSAKVNNASLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLG 278
>sp|Q9Y277|VDAC3_HUMAN Voltage-dependent anion-selective channel protein 3 (VDAC-3)
(hVDAC3) (Outer mitochondrial membrane protein porin 3)
Length = 283
Score = 83.6 bits (205), Expect = 1e-16
Identities = 39/107 (36%), Positives = 57/107 (53%)
Frame = +1
Query: 4 GYHKPDLSLIGTIINKNDIEALIFQKINPSVDIGVQIKWNWNSRNTEFGVVGKYAFDNDS 183
GY D L + + + I+QK+N ++ + + W S NT FG+ KY D +
Sbjct: 172 GYKAADFQLHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRT 231
Query: 184 FFKGKIDNKSIIGLAYGFRARDNVNITLNAEIDGKDLEKGGHRFGLG 324
K++N S+IGL Y R V +TL+A IDGK+ GGH+ GLG
Sbjct: 232 SLSAKVNNASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLG 278
>sp|Q9TT13|VDAC3_RABIT Voltage-dependent anion-selective channel protein 3 (VDAC-3) (Outer
mitochondrial membrane protein porin 3)
Length = 283
Score = 83.6 bits (205), Expect = 1e-16
Identities = 39/107 (36%), Positives = 57/107 (53%)
Frame = +1
Query: 4 GYHKPDLSLIGTIINKNDIEALIFQKINPSVDIGVQIKWNWNSRNTEFGVVGKYAFDNDS 183
GY D L + + + I+QK+N ++ + + W S NT FG+ KY D +
Sbjct: 172 GYKAADFQLHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRT 231
Query: 184 FFKGKIDNKSIIGLAYGFRARDNVNITLNAEIDGKDLEKGGHRFGLG 324
K++N S+IGL Y R V +TL+A IDGK+ GGH+ GLG
Sbjct: 232 SLSAKVNNASLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLG 278
>sp|P82013|VDAC2_MELGA Voltage-dependent anion-selective channel protein 2 (VDAC-2) (Outer
mitochondrial membrane protein porin 2)
Length = 282
Score = 83.6 bits (205), Expect = 1e-16
Identities = 37/108 (34%), Positives = 61/108 (56%)
Frame = +1
Query: 4 GYHKPDLSLIGTIINKNDIEALIFQKINPSVDIGVQIKWNWNSRNTEFGVVGKYAFDNDS 183
GY D L + + ++ I+QK++ +++ V + W S +T FG+ KY D+ +
Sbjct: 171 GYKTGDFQLHTNVNDGSEFGGSIYQKVSDNLETAVNLAWTAGSNSTRFGIAAKYKLDSTA 230
Query: 184 FFKGKIDNKSIIGLAYGFRARDNVNITLNAEIDGKDLEKGGHRFGLGL 327
K++N S++G+ Y R V +TL+A IDGK + GGH+ GLGL
Sbjct: 231 SISAKVNNSSLVGVGYTQTLRPGVKLTLSALIDGKSINAGGHKLGLGL 278
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,702,058
Number of Sequences: 369166
Number of extensions: 1010831
Number of successful extensions: 2981
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2979
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)