Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_B10
(778 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-r... 107 5e-23
sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-r... 107 5e-23
sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3) 91 4e-18
sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen relat... 89 1e-17
sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precur... 87 7e-17
sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precur... 86 9e-17
sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precur... 86 1e-16
sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type ... 83 7e-16
sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 pr... 83 1e-15
sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related pro... 83 1e-15
>sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 107 bits (266), Expect = 5e-23
Identities = 62/155 (40%), Positives = 86/155 (55%), Gaps = 4/155 (2%)
Frame = +3
Query: 6 NSARGVNETALKHHNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHS--KSEGKY 179
++++ N LK HN+ RA H VP L L L + AQ+Y++ LA T HS S G+
Sbjct: 4 SASKQFNNEVLKAHNEYRAQHGVPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQC 63
Query: 180 GENLASSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGF 359
GENLA + Y TG WY EIK Y F + +G GHF+ +VWK+TK G
Sbjct: 64 GENLAWA-----SYDQTGKDVADRWYSEIKSYNFQQPGFTSGT-GHFTAMVWKNTKKIGV 117
Query: 360 GRAKCSNGNFIIVGQYKPPGNFL--GKFKENILSP 458
G+A S+G+ +V +Y P GN + G F+EN+ P
Sbjct: 118 GKASASDGSSFVVARYFPAGNIVNQGFFEENVPPP 152
>sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 107 bits (266), Expect = 5e-23
Identities = 61/155 (39%), Positives = 88/155 (56%), Gaps = 4/155 (2%)
Frame = +3
Query: 6 NSARGVNETALKHHNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHS--KSEGKY 179
++++ + LK HN+ R H VP L L +L + AQ+Y++ LA T HS S G+
Sbjct: 4 SASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQC 63
Query: 180 GENLASSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGF 359
GENLA + Y TG WY EIK+Y F + +G GHF+ +VWK+TK G
Sbjct: 64 GENLAWA-----SYDQTGKEVADRWYSEIKNYNFQQPGFTSGT-GHFTAMVWKNTKKMGV 117
Query: 360 GRAKCSNGNFIIVGQYKPPGNFL--GKFKENILSP 458
G+A S+G+ +V +Y P GN + G F+EN+L P
Sbjct: 118 GKASASDGSSFVVARYFPAGNVVNEGFFEENVLPP 152
>sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3)
Length = 881
Score = 90.9 bits (224), Expect = 4e-18
Identities = 61/141 (43%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Frame = +3
Query: 36 LKHHNKLRALHRVPNLTLDWD--LAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNS 209
L HNK RALH V L W LA AQ YAD+ + +HS +G YGENLA
Sbjct: 30 LNEHNKFRALH-VDTAPLTWSDTLATYAQNYADQYDCSGVLTHS--DGPYGENLAL---- 82
Query: 210 KPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKC-SNGN 386
GY TG A WY EI Y ++ GHF+QVVWK T G G C + N
Sbjct: 83 --GYTDTG--AVDAWYGEISKYNYSNPGFSEST-GHFTQVVWKSTAEIGCGYKYCGTTWN 137
Query: 387 FIIVGQYKPPGNFLGKFKENI 449
IV Y PPGN+LG+F E +
Sbjct: 138 NYIVCSYNPPGNYLGEFAEEV 158
>sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen related in Sc 1)
Length = 299
Score = 89.4 bits (220), Expect = 1e-17
Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Frame = +3
Query: 30 TALKHHNKLRALHR-VPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFN 206
+ L HNK RALH+ P L+ LA AQ+YAD + + +HS G YGENLA ++
Sbjct: 165 SVLAEHNKKRALHKDTPALSWSDTLASYAQDYADNYDCSGTLTHSG--GPYGENLALGYD 222
Query: 207 SKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKCSN-- 380
G AA WY+EI +Y F+ + GHF+QVVWK T G G C
Sbjct: 223 --------GPAAVDAWYNEISNYDFSNPGFSSNT-GHFTQVVWKSTTQVGCGIKTCGGAW 273
Query: 381 GNFIIVGQYKPPGNFLGKFKENI 449
G+++I Y P GN+ G++ +N+
Sbjct: 274 GDYVIC-SYDPAGNYEGEYADNV 295
>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precursor (PR-1A)
Length = 168
Score = 86.7 bits (213), Expect = 7e-17
Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Frame = +3
Query: 12 ARGVNETALKHHNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENL 191
A+ + L HN RA V LT D +A AQ YA +LA + HS G+YGENL
Sbjct: 30 AQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENL 87
Query: 192 ASSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRA 368
A G T A + W DE + Y + G++ GH++QVVW+++ G R
Sbjct: 88 AEG----SGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARV 143
Query: 369 KCSNGNFIIVGQYKPPGNFLGK 434
+C+NG +++ Y PPGN+ G+
Sbjct: 144 QCNNGGYVVSCNYDPPGNYRGE 165
>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
Length = 168
Score = 86.3 bits (212), Expect = 9e-17
Identities = 51/142 (35%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Frame = +3
Query: 12 ARGVNETALKHHNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENL 191
A+ + L HN RA V LT D +A AQ Y +LA + HS G+YGENL
Sbjct: 30 AQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVHS--HGQYGENL 87
Query: 192 ASSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRA 368
A G T A + W DE + Y + G++ GH++QVVW+++ G R
Sbjct: 88 AQG----SGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARV 143
Query: 369 KCSNGNFIIVGQYKPPGNFLGK 434
KC+NG +++ Y PPGN +G+
Sbjct: 144 KCNNGGYVVSCNYDPPGNVIGQ 165
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
Length = 168
Score = 85.5 bits (210), Expect = 1e-16
Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Frame = +3
Query: 12 ARGVNETALKHHNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENL 191
A+ + L HN RA V LT D +A AQ YA +LA + HS G+YGENL
Sbjct: 30 AQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENL 87
Query: 192 ASSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRA 368
A G T A + W +E + Y + G++ GH++QVVW+++ G R
Sbjct: 88 AWG----SGDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARV 143
Query: 369 KCSNGNFIIVGQYKPPGNFLGK 434
+C+NG +I+ Y PPGN +GK
Sbjct: 144 QCNNGGYIVSCNYDPPGNVIGK 165
>sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type precursor
Length = 167
Score = 83.2 bits (204), Expect = 7e-16
Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Frame = +3
Query: 45 HNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYI 224
HN R+ V +T D +A A++YA A HS + +YGENLA F S G+
Sbjct: 39 HNAARSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHS-GDPRYGENLA--FGS--GFE 93
Query: 225 FTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFIIVG 401
TG A W E DY N GK+ GH++QVVW+++ G R +C+NG + I
Sbjct: 94 LTGRNAVDMWVAERNDYNPNTNTCAPGKVCGHYTQVVWRNSVRIGCARVRCNNGAWFITC 153
Query: 402 QYKPPGNFLGK 434
Y PPGN+ G+
Sbjct: 154 NYSPPGNYAGQ 164
>sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 precursor (P4)
Length = 159
Score = 82.8 bits (203), Expect = 1e-15
Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Frame = +3
Query: 45 HNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYI 224
HN RA V ++ D +LA AQ YA+ A + HS + GENLA K G
Sbjct: 35 HNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA----GENLA-----KGGGD 85
Query: 225 FTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFIIVG 401
FTG AA Q W E DY + GK+ GH++QVVW+++ G GRA+C+NG + I
Sbjct: 86 FTGRAAVQLWVSERPDYNYATNQCVGGKMCGHYTQVVWRNSVRLGCGRARCNNGWWFISC 145
Query: 402 QYKPPGNFLGK 434
Y P GN++G+
Sbjct: 146 NYDPVGNWVGE 156
>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 precursor (PRP 1)
Length = 177
Score = 82.8 bits (203), Expect = 1e-15
Identities = 50/143 (34%), Positives = 71/143 (49%)
Frame = +3
Query: 6 NSARGVNETALKHHNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGE 185
+ A+ + L HN R V +T D LA AQ YA++ HS G YGE
Sbjct: 21 SKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIHS--HGPYGE 78
Query: 186 NLASSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGR 365
NLA++F A + W DE + Y +N + G GH++QVVW+++ G R
Sbjct: 79 NLAAAFPQ-----LNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCAR 133
Query: 366 AKCSNGNFIIVGQYKPPGNFLGK 434
+ +NG F I Y PPGNF+G+
Sbjct: 134 VRSNNGWFFITCNYDPPGNFIGQ 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,781,235
Number of Sequences: 369166
Number of extensions: 1660283
Number of successful extensions: 4650
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4562
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)