Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_B02
(871 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor 37 0.093
sp|Q08732|HRK1_YEAST Serine/threonine-protein kinase HRK1 (... 33 0.79
sp|Q9V9K7|ARS2_DROME Arsenite-resistance protein 2 homolog 32 3.0
sp|P13595|NCA11_MOUSE Neural cell adhesion molecule 1, 180 ... 30 6.7
>sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor
Length = 1759
Score = 36.6 bits (83), Expect = 0.093
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -2
Query: 291 PSIPGIQTSDGIVPGY*SGG--KGFVGLEVESGIVGDFDGGSGFTGALPLP 145
P +PG SDG+ PGY G GF GL+ E G+ G DG G G+L +P
Sbjct: 631 PGLPGRPGSDGL-PGYPGGPGQNGFPGLQGEPGLAG-IDGKRGRQGSLGIP 679
>sp|Q08732|HRK1_YEAST Serine/threonine-protein kinase HRK1 (Hygromycin resistance kinase
1)
Length = 759
Score = 33.5 bits (75), Expect = 0.79
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +2
Query: 2 SGSDVEPGPDTDKQRPVFPKVPENTGVST---TSPKEKDSKLNPDDEKNIEGSGR 157
S +D E PD DK+ + K+ +N ST +PK+ D+ + D + N + +GR
Sbjct: 522 SNNDKESTPDNDKESTIDIKISKNENKSTVVSANPKKVDADADADCDANGDSNGR 576
>sp|Q9V9K7|ARS2_DROME Arsenite-resistance protein 2 homolog
Length = 943
Score = 31.6 bits (70), Expect = 3.0
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 38 KQRPVFPKVPENTGVSTTSPKEKDSKLNPDDE 133
KQ P PK+ E+ G T PK DSK+N +E
Sbjct: 421 KQGPQSPKLDEDEGNENTEPKGLDSKINTYEE 452
>sp|P13595|NCA11_MOUSE Neural cell adhesion molecule 1, 180 kDa isoform precursor (N-CAM
180) (NCAM-180)
Length = 1115
Score = 30.4 bits (67), Expect = 6.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +2
Query: 23 GPDTDKQRPVFPKVPENTGVSTTSPKEKDSKLNP---DDEKNIEGSGRAP 163
GPD + +P K P + SPK K + NP +D K EG+ + P
Sbjct: 982 GPDPEPTQPGTVKNPPEAATAPASPKSKAATTNPSQGEDLKMDEGNFKTP 1031
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,713,498
Number of Sequences: 369166
Number of extensions: 1806584
Number of successful extensions: 4298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4296
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)