Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_A22-2
(337 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a 134 7e-32
sp|P32046|RL37A_CHICK 60S ribosomal protein L37a 129 2e-30
sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a 129 2e-30
sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43 129 2e-30
sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a >gi|476064... 128 4e-30
sp|O61462|RL37A_CRYST 60S ribosomal protein L37a 127 8e-30
sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a 127 8e-30
sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35) 125 4e-29
sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43 123 1e-28
sp|P43209|RL37A_BRARA 60S ribosomal protein L37a 123 1e-28
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
Length = 91
Score = 134 bits (337), Expect = 7e-32
Identities = 62/87 (71%), Positives = 70/87 (80%)
Frame = +2
Query: 41 NKGTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCK 220
+K TKKVGIVGKYG RYG+S+RK IKKIEI HAKY+CNFCGK +LKRK GIW CK CK
Sbjct: 1 DKRTKKVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACK 60
Query: 221 KVIAGGAYTHITTAAVTARAHIRRVNE 301
KV+AGGAY TTAA T RA IRR+ +
Sbjct: 61 KVVAGGAYVCSTTAATTIRAAIRRLRD 87
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
Length = 92
Score = 129 bits (325), Expect = 2e-30
Identities = 58/86 (67%), Positives = 70/86 (81%)
Frame = +2
Query: 44 KGTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 223
K TKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K
Sbjct: 3 KRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMK 62
Query: 224 VIAGGAYTHITTAAVTARAHIRRVNE 301
+AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 63 TVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
Length = 92
Score = 129 bits (324), Expect = 2e-30
Identities = 57/86 (66%), Positives = 71/86 (82%)
Frame = +2
Query: 44 KGTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 223
K TKKVGIVGKYGTR+G+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K
Sbjct: 3 KRTKKVGIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMK 62
Query: 224 VIAGGAYTHITTAAVTARAHIRRVNE 301
++AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 63 IVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
Length = 92
Score = 129 bits (324), Expect = 2e-30
Identities = 56/86 (65%), Positives = 68/86 (79%)
Frame = +2
Query: 44 KGTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 223
K TKKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKKA+KR GIW+C CKK
Sbjct: 3 KRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKK 62
Query: 224 VIAGGAYTHITTAAVTARAHIRRVNE 301
+AGGAYT T AA T R+ IRR+ E
Sbjct: 63 TVAGGAYTFSTAAAATVRSTIRRLRE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
sp|P61515|RL37A_RAT 60S ribosomal protein L37a
sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
Length = 92
Score = 128 bits (322), Expect = 4e-30
Identities = 57/86 (66%), Positives = 70/86 (81%)
Frame = +2
Query: 44 KGTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 223
K TKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K
Sbjct: 3 KRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMK 62
Query: 224 VIAGGAYTHITTAAVTARAHIRRVNE 301
+AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 63 TVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
Length = 92
Score = 127 bits (319), Expect = 8e-30
Identities = 56/86 (65%), Positives = 70/86 (81%)
Frame = +2
Query: 44 KGTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 223
K TKKVGIVGKYGTRYG+S+RK +KK+EI H+KY C FCGK A+KR+ VGIW CK C+K
Sbjct: 3 KRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRK 62
Query: 224 VIAGGAYTHITTAAVTARAHIRRVNE 301
V+AGGA+ + T AAVT R+ +RR+ E
Sbjct: 63 VVAGGAWVYSTMAAVTVRSAVRRLRE 88
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
Length = 92
Score = 127 bits (319), Expect = 8e-30
Identities = 56/86 (65%), Positives = 70/86 (81%)
Frame = +2
Query: 44 KGTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 223
K TKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K
Sbjct: 3 KRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMK 62
Query: 224 VIAGGAYTHITTAAVTARAHIRRVNE 301
+AGGA+T+ TT+AVT ++ I+R+ E
Sbjct: 63 TVAGGAWTYNTTSAVTVKSAIKRLKE 88
>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
Length = 92
Score = 125 bits (313), Expect = 4e-29
Identities = 56/86 (65%), Positives = 66/86 (76%)
Frame = +2
Query: 44 KGTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 223
K TKKVGI GKYG RYGSS+R+ +KK+EIQ HA+YDC+FCGKK +KR GIW C CKK
Sbjct: 3 KRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKK 62
Query: 224 VIAGGAYTHITTAAVTARAHIRRVNE 301
+AGGAYT T AA T R+ IRR+ E
Sbjct: 63 TVAGGAYTVSTAAAATVRSTIRRLRE 88
>sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43
Length = 92
Score = 123 bits (309), Expect = 1e-28
Identities = 53/86 (61%), Positives = 66/86 (76%)
Frame = +2
Query: 44 KGTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 223
K TKKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKK ++R GIW C CKK
Sbjct: 3 KRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKK 62
Query: 224 VIAGGAYTHITTAAVTARAHIRRVNE 301
+AGGAYT T AA T R+ IRR+ +
Sbjct: 63 TVAGGAYTVSTAAAATVRSTIRRLRD 88
>sp|P43209|RL37A_BRARA 60S ribosomal protein L37a
Length = 93
Score = 123 bits (309), Expect = 1e-28
Identities = 60/87 (68%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Frame = +2
Query: 44 KGTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 223
K TKKVGIVGKYGTRYG+SIRK IKK+E+ H+KY C FCGK +KRK VGIW CK C K
Sbjct: 3 KRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGK 62
Query: 224 VIAGGAYTHITTAAVTARAH-IRRVNE 301
V AGGAYT T +AVT R+H IRR+ E
Sbjct: 63 VKAGGAYTMNTASAVTVRSHTIRRLRE 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,387,461
Number of Sequences: 369166
Number of extensions: 629021
Number of successful extensions: 2147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2136
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)