Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_A15
(342 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VN93|CPR1_DROME Putative cysteine proteinase CG12163 p... 133 1e-31
sp|Q9R013|CATF_MOUSE Cathepsin F precursor 125 2e-29
sp|Q26534|CATL_SCHMA Cathepsin L precursor (SMCL1) 125 2e-29
sp|Q9UBX1|CATF_HUMAN Cathepsin F precursor (CATSF) 119 3e-27
sp|P25804|CYSP_PEA Cysteine proteinase 15A precursor (Turgo... 93 2e-19
sp|Q10716|CYSP1_MAIZE Cysteine proteinase 1 precursor 92 5e-19
sp|P04988|CYSP1_DICDI Cysteine proteinase 1 precursor 91 1e-18
sp|P14658|CYSP_TRYBB Cysteine proteinase precursor 90 2e-18
sp|P25779|CYSP_TRYCR Cruzipain precursor (Major cysteine pr... 90 2e-18
sp|P05993|PAPA5_CARPA Cysteine proteinase (Clone PLBPC13) 89 4e-18
>sp|Q9VN93|CPR1_DROME Putative cysteine proteinase CG12163 precursor
Length = 614
Score = 133 bits (334), Expect = 1e-31
Identities = 58/97 (59%), Positives = 72/97 (74%), Gaps = 5/97 (5%)
Frame = +2
Query: 8 WCSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSSGE-----PF 172
W NGPISIGINA AMQFYRGG+SHP+K C+ +LDHGVL+VG+ + P+
Sbjct: 517 WLLANGPISIGINANAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDYPNFHKTLPY 576
Query: 173 WIVKNSWGPGWGEDGYYRVFRGTGVCGLNKMPTSAII 283
WIVKNSWGP WGE GYYRV+RG CG+++M TSA++
Sbjct: 577 WIVKNSWGPRWGEQGYYRVYRGDNTCGVSEMATSAVL 613
>sp|Q9R013|CATF_MOUSE Cathepsin F precursor
Length = 462
Score = 125 bits (315), Expect = 2e-29
Identities = 52/95 (54%), Positives = 72/95 (75%)
Frame = +2
Query: 2 AAWCSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSSGEPFWIV 181
AAW + GPIS+ INAF MQFYR GI+HPF+ C+P +DH VL+VG+ S+ P+W +
Sbjct: 369 AAWLAQKGPISVAINAFGMQFYRHGIAHPFRPLCSPWFIDHAVLLVGYGNRSN-IPYWAI 427
Query: 182 KNSWGPGWGEDGYYRVFRGTGVCGLNKMPTSAIIH 286
KNSWG WGE+GYY ++RG+G CG+N M +SA+++
Sbjct: 428 KNSWGSDWGEEGYYYLYRGSGACGVNTMASSAVVN 462
>sp|Q26534|CATL_SCHMA Cathepsin L precursor (SMCL1)
Length = 319
Score = 125 bits (315), Expect = 2e-29
Identities = 54/95 (56%), Positives = 71/95 (74%)
Frame = +2
Query: 2 AAWCSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSSGEPFWIV 181
AAW N IS+G+NA +QFY+ GISHP+ IFC+ LDH VL+VG+ + EPFWIV
Sbjct: 225 AAWLYHNSTISVGMNALLLQFYQHGISHPWWIFCSKYLLDHAVLLVGYGVSEKNEPFWIV 284
Query: 182 KNSWGPGWGEDGYYRVFRGTGVCGLNKMPTSAIIH 286
KNSWG WGE+GY+R++RG G CG+N + TSA+I+
Sbjct: 285 KNSWGVEWGENGYFRMYRGDGSCGINTVATSAMIY 319
>sp|Q9UBX1|CATF_HUMAN Cathepsin F precursor (CATSF)
Length = 484
Score = 119 bits (297), Expect = 3e-27
Identities = 52/94 (55%), Positives = 66/94 (70%)
Frame = +2
Query: 2 AAWCSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSSGEPFWIV 181
AAW + GPIS+ INAF MQFYR GIS P + C+P +DH VL+VG+ S PFW +
Sbjct: 391 AAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRSD-VPFWAI 449
Query: 182 KNSWGPGWGEDGYYRVFRGTGVCGLNKMPTSAII 283
KNSWG WGE GYY + RG+G CG+N M +SA++
Sbjct: 450 KNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV 483
>sp|P25804|CYSP_PEA Cysteine proteinase 15A precursor (Turgor-responsive protein 15A)
Length = 363
Score = 93.2 bits (230), Expect = 2e-19
Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 6/88 (6%)
Frame = +2
Query: 20 NGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSSG------EPFWIV 181
NGP+++ INA MQ Y G+S P+ C LDHGVL+VGF + +P+WI+
Sbjct: 267 NGPLAVAINAAWMQTYMSGVSCPY--VCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWII 324
Query: 182 KNSWGPGWGEDGYYRVFRGTGVCGLNKM 265
KNSWG WGE GYY++ RG VCG++ M
Sbjct: 325 KNSWGQNWGEQGYYKICRGRNVCGVDSM 352
>sp|Q10716|CYSP1_MAIZE Cysteine proteinase 1 precursor
Length = 371
Score = 91.7 bits (226), Expect = 5e-19
Identities = 46/99 (46%), Positives = 65/99 (65%), Gaps = 10/99 (10%)
Frame = +2
Query: 20 NGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTS------SGEPFWIV 181
+GP++IGINA MQ Y GG+S P+ C HLDHGVL+VG+ + +P+WI+
Sbjct: 272 HGPLAIGINAAYMQTYIGGVSCPY--ICGR-HLDHGVLLVGYGASGFAPIRLKDKPYWII 328
Query: 182 KNSWGPGWGEDGYYRVFRGTGV---CGLNKM-PTSAIIH 286
KNSWG WGE+GYY++ RG+ V CG++ M T + +H
Sbjct: 329 KNSWGENWGENGYYKICRGSNVRNKCGVDSMVSTVSAVH 367
>sp|P04988|CYSP1_DICDI Cysteine proteinase 1 precursor
Length = 343
Score = 90.5 bits (223), Expect = 1e-18
Identities = 43/98 (43%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Frame = +2
Query: 2 AAWCSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSS----GEP 169
A + GP++I +A QFY GG+ F I CNP+ LDHG+LIVG++ ++ P
Sbjct: 249 AGYIVSTGPLAIAADAVEWQFYIGGV---FDIPCNPNSLDHGILIVGYSAKNTIFRKNMP 305
Query: 170 FWIVKNSWGPGWGEDGYYRVFRGTGVCGLNKMPTSAII 283
+WIVKNSWG WGE GY + RG CG++ +++II
Sbjct: 306 YWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII 343
>sp|P14658|CYSP_TRYBB Cysteine proteinase precursor
Length = 450
Score = 89.7 bits (221), Expect = 2e-18
Identities = 42/94 (44%), Positives = 61/94 (64%)
Frame = +2
Query: 2 AAWCSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSSGEPFWIV 181
AA+ + NGP++I ++A + Y GGI C LDHGVL+VG+N S+ P+WI+
Sbjct: 251 AAYLAENGPLAIAVDAESFMDYNGGILTS----CTSKQLDHGVLLVGYNDNSN-PPYWII 305
Query: 182 KNSWGPGWGEDGYYRVFRGTGVCGLNKMPTSAII 283
KNSW WGEDGY R+ +GT C +N+ +SA++
Sbjct: 306 KNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAVV 339
>sp|P25779|CYSP_TRYCR Cruzipain precursor (Major cysteine proteinase) (Cruzaine)
Length = 467
Score = 89.7 bits (221), Expect = 2e-18
Identities = 38/94 (40%), Positives = 62/94 (65%)
Frame = +2
Query: 2 AAWCSINGPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSSGEPFWIV 181
AAW ++NGP+++ ++A + Y GG+ C + LDHGVL+VG+N S+ P+WI+
Sbjct: 248 AAWLAVNGPVAVAVDASSWMTYTGGVMTS----CVSEQLDHGVLLVGYND-SAAVPYWII 302
Query: 182 KNSWGPGWGEDGYYRVFRGTGVCGLNKMPTSAII 283
KNSW WGE+GY R+ +G+ C + + +SA++
Sbjct: 303 KNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 336
>sp|P05993|PAPA5_CARPA Cysteine proteinase (Clone PLBPC13)
Length = 96
Score = 88.6 bits (218), Expect = 4e-18
Identities = 41/95 (43%), Positives = 62/95 (65%), Gaps = 7/95 (7%)
Frame = +2
Query: 23 GPISIGINAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSSG------EPFWIVK 184
GP+++ INA MQ Y GG+S P+ C+ L+HGVL+VG+ + +P+W++K
Sbjct: 1 GPLAVAINAAYMQTYIGGVSCPY--ICSR-RLNHGVLLVGYGSAGYAPIRLKEKPYWVIK 57
Query: 185 NSWGPGWGEDGYYRVFRGTGVCGLNKM-PTSAIIH 286
NSWG WGE+GYY++ RG +CG++ M T A +H
Sbjct: 58 NSWGENWGENGYYKICRGRNICGVDSMVSTVAAVH 92
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,255,117
Number of Sequences: 369166
Number of extensions: 746863
Number of successful extensions: 1906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)