Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_A12-2
(487 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0) 81 1e-15
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 79 6e-15
sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) 76 4e-14
sp|Q9C3Z6|RLA0_PODAN 60S acidic ribosomal protein P0 76 5e-14
sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) 75 6e-14
sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E) 75 6e-14
sp|P14869|RLA0_MOUSE 60S acidic ribosomal protein P0 (L10E) 75 6e-14
sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) 75 6e-14
sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E) 75 6e-14
sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E) 75 8e-14
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0)
Length = 317
Score = 80.9 bits (198), Expect = 1e-15
Identities = 38/58 (65%), Positives = 47/58 (81%)
Frame = +2
Query: 311 GNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQAL 484
GNVGFVFT GDL V+D +L K++APA+A A+AP+ V++P Q T LGPEKTSFFQAL
Sbjct: 84 GNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTGLGPEKTSFFQAL 141
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 79.0 bits (193), Expect = 6e-15
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +2
Query: 311 GNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQAL 484
GNVGFVFT GDL V+D +L K++APA+ A+AP+ V++P Q T LGPEKTSFFQAL
Sbjct: 84 GNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQAL 141
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E)
Length = 319
Score = 76.3 bits (186), Expect = 4e-14
Identities = 37/58 (63%), Positives = 44/58 (75%)
Frame = +2
Query: 311 GNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQAL 484
GNVGFVFT DL V+D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL
Sbjct: 84 GNVGFVFTKEDLTEVRDLLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQAL 141
>sp|Q9C3Z6|RLA0_PODAN 60S acidic ribosomal protein P0
Length = 314
Score = 75.9 bits (185), Expect = 5e-14
Identities = 37/58 (63%), Positives = 44/58 (75%)
Frame = +2
Query: 311 GNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQAL 484
GNVGFVFTNGDL ++D IL+ K+ APA+A AVAPV V +P T + P KTSFFQAL
Sbjct: 82 GNVGFVFTNGDLKEIRDKILANKVAAPARAGAVAPVDVWIPAGNTGMEPGKTSFFQAL 139
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 75.5 bits (184), Expect = 6e-14
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +2
Query: 311 GNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQAL 484
GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL
Sbjct: 84 GNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQAL 141
>sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E)
Length = 316
Score = 75.5 bits (184), Expect = 6e-14
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +2
Query: 311 GNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQAL 484
GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL
Sbjct: 84 GNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQAL 141
>sp|P14869|RLA0_MOUSE 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 75.5 bits (184), Expect = 6e-14
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +2
Query: 311 GNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQAL 484
GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL
Sbjct: 84 GNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQAL 141
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 75.5 bits (184), Expect = 6e-14
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +2
Query: 311 GNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQAL 484
GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL
Sbjct: 84 GNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQAL 141
>sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E)
Length = 309
Score = 75.5 bits (184), Expect = 6e-14
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +2
Query: 311 GNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQAL 484
GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL
Sbjct: 75 GNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQAL 132
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E)
Length = 315
Score = 75.1 bits (183), Expect = 8e-14
Identities = 37/58 (63%), Positives = 44/58 (75%)
Frame = +2
Query: 311 GNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQAL 484
GNVGFVFT DL V+D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL
Sbjct: 84 GNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFFQAL 141
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,532,341
Number of Sequences: 369166
Number of extensions: 1058745
Number of successful extensions: 3684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3669
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)