Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_A05
(884 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36409|RAB2_DICDI Ras-related protein Rab2 100 7e-21
sp|P49104|RAB2B_MAIZE Ras-related protein Rab-2-B 98 3e-20
sp|P35286|RAB13_RAT Ras-related protein Rab-13 97 5e-20
sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 97 5e-20
sp|P49103|RAB2A_MAIZE Ras-related protein Rab-2-A 97 5e-20
sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV 96 1e-19
sp|Q9NP72|RAB18_HUMAN Ras-related protein Rab-18 96 1e-19
sp|P35293|RAB18_MOUSE Ras-related protein Rab-18 96 1e-19
sp|P28186|ARA3_ARATH Ras-related protein ARA-3 96 1e-19
sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4 96 2e-19
>sp|P36409|RAB2_DICDI Ras-related protein Rab2
Length = 199
Score = 100 bits (248), Expect = 7e-21
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 1/173 (0%)
Frame = +3
Query: 3 CLIKRYCEKRFVEKYLATIGIDYGVTKILFKNKELKINIFDMAGHSFFYEVRNEFYKDTQ 182
CL+ ++ +KRF + TIG+++G I NK +K+ I+D AG F + +Y+ +
Sbjct: 12 CLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSA 71
Query: 183 GAILVYDVTDRTSFEDLDRWLQEMKSELPSAEDFNKITFVVCANKVD-KAQRAVDSMEGR 359
GA+LVYD+T R +F L WL++ +S S +T ++ NK D +++RAV EGR
Sbjct: 72 GALLVYDITRRDTFNHLTCWLKDARSYANS-----NMTIILIGNKSDMESKRAVSYEEGR 126
Query: 360 LWCDSHQFIYFETSALSNENVINLFEALFDGIISTISTGKRPVPVPSSTTKIG 518
+ D + I+ ETSA + NV F I I G + S K+G
Sbjct: 127 QFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINNESFGIKLG 179
>sp|P49104|RAB2B_MAIZE Ras-related protein Rab-2-B
Length = 210
Score = 98.2 bits (243), Expect = 3e-20
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 1/174 (0%)
Frame = +3
Query: 3 CLIKRYCEKRFVEKYLATIGIDYGVTKILFKNKELKINIFDMAGHSFFYEVRNEFYKDTQ 182
CL+ ++ +KRF + TIG+++G I NK +K+ I+D AG F + +Y+
Sbjct: 21 CLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80
Query: 183 GAILVYDVTDRTSFEDLDRWLQEMKSELPSAEDFNKITFVVCANKVDKA-QRAVDSMEGR 359
GA+LVYD+T R +F L WL++ + + +T ++ NK D + +RAV EG
Sbjct: 81 GALLVYDITRRETFNHLASWLEDARQHANA-----NMTIMLVGNKCDLSHRRAVSYEEGE 135
Query: 360 LWCDSHQFIYFETSALSNENVINLFEALFDGIISTISTGKRPVPVPSSTTKIGY 521
+ H I+ E SA + +NV F I I G V S K+GY
Sbjct: 136 QFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGY 189
>sp|P35286|RAB13_RAT Ras-related protein Rab-13
Length = 203
Score = 97.4 bits (241), Expect = 5e-20
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Frame = +3
Query: 3 CLIKRYCEKRFVEKYLATIGIDYGVTKILFKNKELKINIFDMAGHSFFYEVRNEFYKDTQ 182
CLI R+ E F Y++TIGID+ + + + K +K+ ++D AG F + +Y+
Sbjct: 23 CLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAM 82
Query: 183 GAILVYDVTDRTSFEDLDRWLQEMKSELPSAEDFNKITFVVCANKVD-KAQRAVDSMEGR 359
G ILVYD+TD SFE++ W++ +K + + ++ NK D +A+R V +
Sbjct: 83 GIILVYDITDEKSFENIQNWMKSIKENASAG-----VERLLLGNKCDMEAKRKVQREQAE 137
Query: 360 LWCDSHQFIYFETSALSNENVINLFEALFDGIISTISTGKR 482
H+ +FETSA S+ NV F +L I+ + TG R
Sbjct: 138 RLAREHRIRFFETSAKSSVNVDEAFSSLARDIL--LKTGGR 176
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13
Length = 202
Score = 97.4 bits (241), Expect = 5e-20
Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 1/173 (0%)
Frame = +3
Query: 3 CLIKRYCEKRFVEKYLATIGIDYGVTKILFKNKELKINIFDMAGHSFFYEVRNEFYKDTQ 182
CLI R+ E F Y++TIGID+ + + + K +K+ ++D AG F + +Y+
Sbjct: 23 CLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAM 82
Query: 183 GAILVYDVTDRTSFEDLDRWLQEMKSELPSAEDFNKITFVVCANKVD-KAQRAVDSMEGR 359
G ILVYD+TD SFE++ W++ +K + + ++ NK D +A+R V +
Sbjct: 83 GIILVYDITDEKSFENIQNWMKSIKENASAG-----VERLLLGNKCDMEAKRQVQREQAE 137
Query: 360 LWCDSHQFIYFETSALSNENVINLFEALFDGIISTISTGKRPVPVPSSTTKIG 518
H+ +FETSA S+ NV F +L I+ + TG R S + G
Sbjct: 138 KLAREHRIRFFETSAKSSVNVDEAFSSLARDIL--LKTGGRRSGTNSKPSSTG 188
>sp|P49103|RAB2A_MAIZE Ras-related protein Rab-2-A
Length = 209
Score = 97.4 bits (241), Expect = 5e-20
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 1/174 (0%)
Frame = +3
Query: 3 CLIKRYCEKRFVEKYLATIGIDYGVTKILFKNKELKINIFDMAGHSFFYEVRNEFYKDTQ 182
CL+ ++ +KRF + TIG+++G I NK +K+ I+D AG F + +Y+
Sbjct: 21 CLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80
Query: 183 GAILVYDVTDRTSFEDLDRWLQEMKSELPSAEDFNKITFVVCANKVDKA-QRAVDSMEGR 359
GA+LVYD+T R +F L WL++ + + +T ++ NK D + +RAV EG
Sbjct: 81 GALLVYDITRRETFNHLASWLEDARQHANA-----NMTIMLVGNKCDLSHRRAVSYEEGE 135
Query: 360 LWCDSHQFIYFETSALSNENVINLFEALFDGIISTISTGKRPVPVPSSTTKIGY 521
+ H I+ E SA + +NV F I I G V S K+GY
Sbjct: 136 QFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGY 189
>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV
Length = 215
Score = 96.3 bits (238), Expect = 1e-19
Identities = 56/173 (32%), Positives = 97/173 (56%), Gaps = 3/173 (1%)
Frame = +3
Query: 3 CLIKRYCEKRFVEKYLATIGIDYGVTKILFKNKELKINIFDMAGHSFFYEVRNEFYKDTQ 182
CL+ R+ + F ++ TIGID+ + I K +K+ I+D AG F + +Y+
Sbjct: 30 CLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89
Query: 183 GAILVYDVTDRTSFEDLDRWLQEMKSELPSAEDFNKITFVVCANK--VDKAQRAVDSMEG 356
G +LVYDVTD +SF ++ W++ + E ++++ NKI + NK +D+++RAV + +G
Sbjct: 90 GILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKI---LVGNKADMDESKRAVPTAKG 144
Query: 357 RLWCDSHQFIYFETSALSNENVINLFEALFDGIISTIS-TGKRPVPVPSSTTK 512
+ D + +FETSA +N NV +F ++ I ++ + R PS T K
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIK 197
>sp|Q9NP72|RAB18_HUMAN Ras-related protein Rab-18
Length = 206
Score = 95.9 bits (237), Expect = 1e-19
Identities = 55/153 (35%), Positives = 80/153 (52%)
Frame = +3
Query: 6 LIKRYCEKRFVEKYLATIGIDYGVTKILFKNKELKINIFDMAGHSFFYEVRNEFYKDTQG 185
L+ R+ + F + ATIG+D+ V I + K+ I+D AG F + +Y+ QG
Sbjct: 24 LLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 83
Query: 186 AILVYDVTDRTSFEDLDRWLQEMKSELPSAEDFNKITFVVCANKVDKAQRAVDSMEGRLW 365
ILVYDVT R +F LD WL E+++ N I ++ NK+DK R VD EG +
Sbjct: 84 VILVYDVTRRDTFVKLDNWLNELETYCTR----NDIVNMLVGNKIDKENREVDRNEGLKF 139
Query: 366 CDSHQFIYFETSALSNENVINLFEALFDGIIST 464
H ++ E SA + + V FE L + II T
Sbjct: 140 ARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 172
>sp|P35293|RAB18_MOUSE Ras-related protein Rab-18
Length = 206
Score = 95.9 bits (237), Expect = 1e-19
Identities = 55/153 (35%), Positives = 80/153 (52%)
Frame = +3
Query: 6 LIKRYCEKRFVEKYLATIGIDYGVTKILFKNKELKINIFDMAGHSFFYEVRNEFYKDTQG 185
L+ R+ + F + ATIG+D+ V I + K+ I+D AG F + +Y+ QG
Sbjct: 24 LLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 83
Query: 186 AILVYDVTDRTSFEDLDRWLQEMKSELPSAEDFNKITFVVCANKVDKAQRAVDSMEGRLW 365
ILVYDVT R +F LD WL E+++ N I ++ NK+DK R VD EG +
Sbjct: 84 VILVYDVTRRDTFVKLDNWLNELETYCTR----NDIVNMLVGNKIDKENREVDRNEGLKF 139
Query: 366 CDSHQFIYFETSALSNENVINLFEALFDGIIST 464
H ++ E SA + + V FE L + II T
Sbjct: 140 ARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 172
>sp|P28186|ARA3_ARATH Ras-related protein ARA-3
Length = 216
Score = 95.9 bits (237), Expect = 1e-19
Identities = 55/166 (33%), Positives = 94/166 (56%), Gaps = 3/166 (1%)
Frame = +3
Query: 3 CLIKRYCEKRFVEKYLATIGIDYGVTKILFKNKELKINIFDMAGHSFFYEVRNEFYKDTQ 182
CL+ R+ + F ++ TIGID+ + I K +K+ I+D AG F + +Y+
Sbjct: 30 CLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89
Query: 183 GAILVYDVTDRTSFEDLDRWLQEMKSELPSAEDFNKITFVVCANK--VDKAQRAVDSMEG 356
G +LVYDVTD +SF ++ W++ + E ++++ NKI + NK +D+++RAV + +G
Sbjct: 90 GILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKI---LVGNKADMDESKRAVPTAKG 144
Query: 357 RLWCDSHQFIYFETSALSNENVINLFEALFDGIISTIS-TGKRPVP 491
+ D + +FETSA +N NV +F ++ I +S T R P
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEP 190
>sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4
Length = 213
Score = 95.5 bits (236), Expect = 2e-19
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 1/174 (0%)
Frame = +3
Query: 3 CLIKRYCEKRFVEKYLATIGIDYGVTKILFKNKELKINIFDMAGHSFFYEVRNEFYKDTQ 182
CL+ ++ +KRF + TIG+++G I K++K+ I+D AG F + +Y+
Sbjct: 21 CLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 80
Query: 183 GAILVYDVTDRTSFEDLDRWLQEMKSELPSAEDFNKITFVVCANKVDKA-QRAVDSMEGR 359
GA+LVYD+T R +F L WL++ + +T ++ NK D +RAV + EG
Sbjct: 81 GALLVYDITRRETFNHLASWLEDARQHANP-----NMTIMLIGNKCDLTHRRAVTTEEGE 135
Query: 360 LWCDSHQFIYFETSALSNENVINLFEALFDGIISTISTGKRPVPVPSSTTKIGY 521
+ H I+ ETSA + NV F I I G V S K+GY
Sbjct: 136 QFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGY 189
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,179,522
Number of Sequences: 369166
Number of extensions: 1849212
Number of successful extensions: 7584
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7368
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)