Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_A01
(431 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05106|ITB3_HUMAN Integrin beta-3 precursor (Platelet me... 35 0.052
sp|O54890|ITB3_MOUSE Integrin beta-3 precursor (Platelet me... 35 0.088
sp|Q9Y493|ZAN_HUMAN Zonadhesin precursor 32 0.44
sp|Q823J9|AMPA_CHLCV Probable cytosol aminopeptidase (Leuci... 32 0.57
sp|Q28983|ZAN_PIG Zonadhesin precursor 31 0.97
sp|Q6X6Z7|TEKT3_MOUSE Tektin-3 31 1.3
sp|Q9CTN5|CN039_MOUSE Hypothetical protein C14orf39 homolog 30 2.2
sp|Q36838|ATP8_TRIRU ATP synthase protein 8 (ATPase subunit... 30 2.2
sp|Q91VL8|TE2IP_MOUSE Telomeric repeat binding factor 2 int... 30 2.8
sp|P14546|COX3_LEITA Cytochrome c oxidase subunit 3 (Cytoch... 30 2.8
>sp|P05106|ITB3_HUMAN Integrin beta-3 precursor (Platelet membrane glycoprotein IIIa)
(GPIIIa) (CD61 antigen)
Length = 788
Score = 35.4 bits (80), Expect = 0.052
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Frame = +3
Query: 24 NELKDNIADESVTFQINLNNPSDNKPTIDKES-----ITQPT-ESTAIPIMPKNGDNIFT 185
N LKDN A ES+ F ++ +++P DK S +TQ + + A+ + P + N F+
Sbjct: 69 NLLKDNCAPESIEFPVSEARVLEDRPLSDKGSGDSSQVTQVSPQRIALRLRPDDSKN-FS 127
Query: 186 IQENKIEEVTMNVQTPLIQS---KDFLESMQFTNTPFFHDYSDATTTIHI 326
IQ ++E+ +++ + S KD L S+Q T T+ + I
Sbjct: 128 IQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRI 177
>sp|O54890|ITB3_MOUSE Integrin beta-3 precursor (Platelet membrane glycoprotein IIIa)
(GPIIIa) (CD61 antigen)
Length = 787
Score = 34.7 bits (78), Expect = 0.088
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Frame = +3
Query: 24 NELKDNIADESVTF-----QINLNNPSDNKPTIDKESITQPTESTAIPIMPKNGDNIFTI 188
N LKDN A ES+ F QI P +K + ITQ + + + + IF++
Sbjct: 68 NLLKDNCAPESIEFPVSEAQILEARPLSSKGSGSSAQITQVSPQRIVLRLRPDDSKIFSL 127
Query: 189 QENKIEEVTMNVQTPL---IQSKDFLESMQFTNTPFFHDYSDATTTIHI 326
Q ++E+ +++ + KD L S+Q T T+ + I
Sbjct: 128 QVRQVEDYPVDIYYLMDLSFSMKDDLSSIQTLGTKLASQMRKLTSNLRI 176
>sp|Q9Y493|ZAN_HUMAN Zonadhesin precursor
Length = 2812
Score = 32.3 bits (72), Expect = 0.44
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Frame = +3
Query: 12 PVIPNELKDNIADESVTFQINLNNPSDNKPTIDKESITQPTESTAI----PIMPKNGDNI 179
P P E K I E T KPTI E +T PTE I P +P I
Sbjct: 738 PTTPTE-KPTIPTEKPTISPEKPTTPTEKPTISPEKLTIPTEKPTIPTEKPTIPTEKPTI 796
Query: 180 FTIQ-ENKIEEVTMNVQTPLI 239
T + EE T++ + P I
Sbjct: 797 STEEPTTPTEETTISTEKPSI 817
Score = 32.3 bits (72), Expect = 0.44
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +3
Query: 18 IPNELKDNIADESVTFQINLNNPSDNKPTIDKESITQPTESTAIP 152
IP E K I+ E +T S KPTI E +T PTE IP
Sbjct: 943 IPTE-KPTISPEKLTIPTEKPTISTEKPTIPTEKLTIPTEKPTIP 986
Score = 31.6 bits (70), Expect = 0.75
Identities = 20/47 (42%), Positives = 22/47 (46%)
Frame = +3
Query: 12 PVIPNELKDNIADESVTFQINLNNPSDNKPTIDKESITQPTESTAIP 152
P IP E K +I E T + S KPTI E T PTE IP
Sbjct: 682 PSIPTE-KPSIPTEKPTISMEETIISTEKPTISPEKPTIPTEKPTIP 727
Score = 30.8 bits (68), Expect = 1.3
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +3
Query: 12 PVIPNELKDNIADESVTFQINLNNPSDNKPTIDKESITQPTESTAIP 152
P IP E + I+ E +T S KPTI E T PTE IP
Sbjct: 885 PTIPIE-ETTISTEKLTIPTEKPTISPEKPTISTEKPTIPTEKPTIP 930
Score = 30.4 bits (67), Expect = 1.7
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Frame = +3
Query: 12 PVIPNELKDNIADESVTFQINLNNPSDNKPTIDKESIT----QPTESTAIPIMPKNGDNI 179
P IP+E K N+ E T KPTI E T +PT ST P +P
Sbjct: 605 PTIPSE-KPNMPSEKPTIPSEKPTILTEKPTIPSEKPTIPSEKPTISTEKPTVPTEEPTT 663
Query: 180 FTIQENKIEEVTMNVQTPLIQSK 248
T EE T +++ P+I ++
Sbjct: 664 PT------EETTTSMEEPVIPTE 680
Score = 30.4 bits (67), Expect = 1.7
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Frame = +3
Query: 12 PVIPNEL------KDNIADESVTFQINLNNPSDNKPTIDKESITQPTESTAI----PIMP 161
P IP+E K I E T S KPT+ E T PTE T P++P
Sbjct: 619 PTIPSEKPTILTEKPTIPSEKPTIPSEKPTISTEKPTVPTEEPTTPTEETTTSMEEPVIP 678
Query: 162 KNGDNIFTIQEN-KIEEVTMNVQTPLIQSK 248
+I T + + E+ T++++ +I ++
Sbjct: 679 TEKPSIPTEKPSIPTEKPTISMEETIISTE 708
Score = 30.4 bits (67), Expect = 1.7
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = +3
Query: 12 PVIPNELKDNIADESVTFQINLNNPSDNKPTIDKESITQPTE----STAIPIMPKNGDNI 179
P IP E K I E T KPTI E +T PTE ST P +P I
Sbjct: 920 PTIPTE-KPTIPTEETTISTEKLTIPTEKPTISPEKLTIPTEKPTISTEKPTIPTEKLTI 978
Query: 180 FTIQENKIEEVTMNVQTPLIQSK 248
T E+ T+ + P I ++
Sbjct: 979 PT------EKPTIPTEKPTIPTE 995
Score = 29.6 bits (65), Expect = 2.8
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +3
Query: 12 PVIPNELKDNIADESVTFQINLNNPSDNKPTIDKESITQPTESTAIPIMPKNGDNIFTIQ 191
P IP E K I+ E T S KP+I E T PTE T +++
Sbjct: 787 PTIPTE-KPTISTEEPTTPTEETTISTEKPSIPMEKPTLPTEETTT-----------SVE 834
Query: 192 ENKI--EEVTMNVQTPLIQSK 248
E I E++T+ ++ P I ++
Sbjct: 835 ETTISTEKLTIPMEKPTISTE 855
Score = 28.5 bits (62), Expect = 6.3
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = +3
Query: 18 IPNELKDNIADESVTFQINLNNPSDNKPTIDKESITQPTESTAIPIMPKNGDNIFTIQEN 197
IP E K I+ E T S K TI E +T PTE IPI TI
Sbjct: 845 IPME-KPTISTEKPTIPTEKPTISPEKLTIPTEKLTIPTEKPTIPIEET------TISTE 897
Query: 198 KI----EEVTMNVQTPLIQSK 248
K+ E+ T++ + P I ++
Sbjct: 898 KLTIPTEKPTISPEKPTISTE 918
Score = 28.1 bits (61), Expect = 8.3
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Frame = +3
Query: 12 PVIPNELKDNIADESVTFQINLNNPSDNKPTIDKESITQPTESTAI-PIMPKNGDNIFTI 188
P I E K I E T + S KPT E T PTE I P P TI
Sbjct: 710 PTISPE-KPTIPTEKPTIPTEKSTISPEKPTTPTEKPTIPTEKPTISPEKPTTPTEKPTI 768
Query: 189 QENKI----EEVTMNVQTPLIQSKDFLESMQFTNTP 284
K+ E+ T+ + P I ++ S + TP
Sbjct: 769 SPEKLTIPTEKPTIPTEKPTIPTEKPTISTEEPTTP 804
>sp|Q823J9|AMPA_CHLCV Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 499
Score = 32.0 bits (71), Expect = 0.57
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 9 NPVIP--NELKDNIADESVTFQINLNNPSDNKPTIDKESITQP--TESTAIPIMPKNGDN 176
N V+P +EL+ +I D + + + N P KES P T+ + I+PK D
Sbjct: 108 NVVLPTISELRISIEDFLTNLTSGILSLNYNYPKYTKESSNDPLLTKVNVLGIVPKIADR 167
Query: 177 IFTIQENKIEEV 212
IF +EN E V
Sbjct: 168 IFRKEENIFEGV 179
>sp|Q28983|ZAN_PIG Zonadhesin precursor
Length = 2476
Score = 31.2 bits (69), Expect = 0.97
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = +3
Query: 12 PVIPNELKDNIADESVTFQINLNNPSDNKPTIDKESITQPTESTAIPI-MPKNGDNIFTI 188
P +P E K + E T KPT+ E +T PTE +P P TI
Sbjct: 469 PTVPIE-KPMVPTERTTIPTERTTIPTEKPTVPTEKLTVPTEKPIVPTEKPIVPTEKHTI 527
Query: 189 QENKIEEVTMNVQTP 233
K+ +T TP
Sbjct: 528 PTEKLTVLTERTTTP 542
>sp|Q6X6Z7|TEKT3_MOUSE Tektin-3
Length = 490
Score = 30.8 bits (68), Expect = 1.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 198 KIEEVTMNVQTPLIQSKDFLESMQFTNTPFFHDYSDATTTIHIDNSK 338
+++E +Q L S+D L+S+ T HD + T++ID K
Sbjct: 426 EVDETIQTLQQRLRDSEDTLQSLAHTKATLEHDLAVKANTLYIDQEK 472
>sp|Q9CTN5|CN039_MOUSE Hypothetical protein C14orf39 homolog
Length = 574
Score = 30.0 bits (66), Expect = 2.2
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 22/108 (20%)
Frame = +3
Query: 66 QINLNNPSDNKPTI---------DKESITQPTESTA------IPIMPKNGDNIFTIQENK 200
Q LN P+ N+ DKE++ Q ES I K+ +N +++E +
Sbjct: 347 QFRLNQPNYNQRIEKEHIDAECGDKETVRQVRESKCSTQALYIEHFGKSIENN-SVEEER 405
Query: 201 IEEVTMNVQTP-------LIQSKDFLESMQFTNTPFFHDYSDATTTIH 323
E +TP +++ + +E MQF +PFF +AT+ H
Sbjct: 406 DENFPQTPETPSFLRTPEALKTPESMEKMQFPKSPFFEITKNATSEGH 453
>sp|Q36838|ATP8_TRIRU ATP synthase protein 8 (ATPase subunit 8) (A6L)
Length = 48
Score = 30.0 bits (66), Expect = 2.2
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = -1
Query: 176 VVPIFWHYWYCSRFSRLRYAFFIDCRFVIRWIIQIYLKRYRFIS 45
++P F+ L + FF+ ++++ WI+++Y+ R ++ S
Sbjct: 4 LIPFFFFNQVVFTLISLSFIFFVFSKYILPWIVRLYVSRNQYNS 47
>sp|Q91VL8|TE2IP_MOUSE Telomeric repeat binding factor 2 interacting protein 1
(TRF2-interacting telomeric protein Rap1)
Length = 393
Score = 29.6 bits (65), Expect = 2.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 27 ELKDNIADESVTFQINLNNPSDNKPTIDKESITQPTESTAIP 152
E + + DES F+I++ + PT +++S TQP E P
Sbjct: 257 EFGEAVVDESPDFEIHITMCDGDPPTPEEDSETQPDEEEEEP 298
>sp|P14546|COX3_LEITA Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 284
Score = 29.6 bits (65), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 200 FIFLYSKYVVPIFWHYWYCSRFSRLRYAFF 111
F+FLY VV ++WH+ C F LR+ +F
Sbjct: 248 FVFLY---VVCLYWHFVDCVWFFLLRFVYF 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,601,923
Number of Sequences: 369166
Number of extensions: 935551
Number of successful extensions: 2785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2767
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)